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The map label for this gene is yjbM [H]

Identifier: 238916963

GI number: 238916963

Start: 1045470

End: 1046273

Strand: Reverse

Name: yjbM [H]

Synonym: EUBELI_01032

Alternate gene names: 238916963

Gene position: 1046273-1045470 (Counterclockwise)

Preceding gene: 238916965

Following gene: 238916962

Centisome position: 48.8

GC content: 34.58

Gene sequence:

>804_bases
ATGGAAATTCAGATGTGGAAGGAAATTCTTACACCTTACGATCTTGCGGTGGAAGAACTTCAGGTTAAATTTAATCATAT
AATTAAAGAGTATCGTCAGGCTGGCGTGTATTCACCGATAGAACAGGTTTTAGGAAGGGTTAAAAGCATTTCCAGTATAA
TTGAAAAGGCACAGAGACGAGGAATTGATATTGATAAAATACAGGAAAACCTTTTTGATATTGCAGGAATCAGACTTATA
TGCCAGTTTACAGAAGATATATATACAGTCGTGAGGCTTATCAAGAAACGAAAAGACATGACTGTAATAAGTGAGAAGGA
TTATATTAAGAATATTAAAGACAGTGGTTATAGAAGTTATCACCTTATAGTCCATTATGAAGTTGAGACAGTGAAAGGTA
CTACTATTATACCTGTGGAGATTCAGATAAGAACTCTTGGCATGAATTTCTGGGCAATTATTGAACATTCGCTTCAATAC
AAATATGATGGTGAAATTCCTGCACATGTGAAAGAAAGACTAAATGCGGCATCAGATGCACTTATAACACTTGATAACGA
AATGTCATCTATCCATGATGAAATTATTAATTCCCAGACCTACTTTATGGTTAAGGCAAATATTGTTTCAGATATATTAA
GTACAATCCAGAATCTGTACAAGGTTGCCAATAAGCAGGTTGTTATAAAAATCCAGGATGAATTCTATGAAATATTTGAA
AAAGGCGATGTTAATGAACTTTCAAGATTTTCACGCCAGTTGGATATAATTGCTGAGGATTACCGGGCACAGTCAGTGCA
GTAA

Upstream 100 bases:

>100_bases
TATCATACGACCTCTTTGACAATTGATATTTAATAATATTCTCAAAAAATTCTAATTATGTGTTATAATAAAATGTAAAT
TTGCAATCAAGGAGATTACA

Downstream 100 bases:

>100_bases
CTCATTACAGAAACTATACAGAATTGAGGTATACAAAGTGAATTTACCAGAGAAATATACAGAATCAATGAAAATGATGT
TAGGTGATGAATATGACAGC

Product: GTP pyrophosphokinase

Products: NA

Alternate protein names: (p)ppGpp synthase yjbM; Small alarmone synthase 1; SAS 1 [H]

Number of amino acids: Translated: 267; Mature: 267

Protein sequence:

>267_residues
MEIQMWKEILTPYDLAVEELQVKFNHIIKEYRQAGVYSPIEQVLGRVKSISSIIEKAQRRGIDIDKIQENLFDIAGIRLI
CQFTEDIYTVVRLIKKRKDMTVISEKDYIKNIKDSGYRSYHLIVHYEVETVKGTTIIPVEIQIRTLGMNFWAIIEHSLQY
KYDGEIPAHVKERLNAASDALITLDNEMSSIHDEIINSQTYFMVKANIVSDILSTIQNLYKVANKQVVIKIQDEFYEIFE
KGDVNELSRFSRQLDIIAEDYRAQSVQ

Sequences:

>Translated_267_residues
MEIQMWKEILTPYDLAVEELQVKFNHIIKEYRQAGVYSPIEQVLGRVKSISSIIEKAQRRGIDIDKIQENLFDIAGIRLI
CQFTEDIYTVVRLIKKRKDMTVISEKDYIKNIKDSGYRSYHLIVHYEVETVKGTTIIPVEIQIRTLGMNFWAIIEHSLQY
KYDGEIPAHVKERLNAASDALITLDNEMSSIHDEIINSQTYFMVKANIVSDILSTIQNLYKVANKQVVIKIQDEFYEIFE
KGDVNELSRFSRQLDIIAEDYRAQSVQ
>Mature_267_residues
MEIQMWKEILTPYDLAVEELQVKFNHIIKEYRQAGVYSPIEQVLGRVKSISSIIEKAQRRGIDIDKIQENLFDIAGIRLI
CQFTEDIYTVVRLIKKRKDMTVISEKDYIKNIKDSGYRSYHLIVHYEVETVKGTTIIPVEIQIRTLGMNFWAIIEHSLQY
KYDGEIPAHVKERLNAASDALITLDNEMSSIHDEIINSQTYFMVKANIVSDILSTIQNLYKVANKQVVIKIQDEFYEIFE
KGDVNELSRFSRQLDIIAEDYRAQSVQ

Specific function: Functions as a (p)ppGpp synthase. In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance. YjbM has probably a

COG id: COG2357

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the relA/spoT family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007685 [H]

Pfam domain/function: PF04607 RelA_SpoT [H]

EC number: =2.7.6.5 [H]

Molecular weight: Translated: 31129; Mature: 31129

Theoretical pI: Translated: 5.44; Mature: 5.44

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEIQMWKEILTPYDLAVEELQVKFNHIIKEYRQAGVYSPIEQVLGRVKSISSIIEKAQRR
CCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHC
GIDIDKIQENLFDIAGIRLICQFTEDIYTVVRLIKKRKDMTVISEKDYIKNIKDSGYRSY
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEECCHHHHHHHHCCCCCEE
HLIVHYEVETVKGTTIIPVEIQIRTLGMNFWAIIEHSLQYKYDGEIPAHVKERLNAASDA
EEEEEEEEEEECCCEEEEEEEEEEEECCHHHHHHHHHHCEEECCCCCHHHHHHHCHHCCE
LITLDNEMSSIHDEIINSQTYFMVKANIVSDILSTIQNLYKVANKQVVIKIQDEFYEIFE
EEEECCHHHHHHHHHHCCCEEEEEEHHHHHHHHHHHHHHHHHCCCEEEEEEHHHHHHHHH
KGDVNELSRFSRQLDIIAEDYRAQSVQ
CCCHHHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MEIQMWKEILTPYDLAVEELQVKFNHIIKEYRQAGVYSPIEQVLGRVKSISSIIEKAQRR
CCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHC
GIDIDKIQENLFDIAGIRLICQFTEDIYTVVRLIKKRKDMTVISEKDYIKNIKDSGYRSY
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEECCHHHHHHHHCCCCCEE
HLIVHYEVETVKGTTIIPVEIQIRTLGMNFWAIIEHSLQYKYDGEIPAHVKERLNAASDA
EEEEEEEEEEECCCEEEEEEEEEEEECCHHHHHHHHHHCEEECCCCCHHHHHHHCHHCCE
LITLDNEMSSIHDEIINSQTYFMVKANIVSDILSTIQNLYKVANKQVVIKIQDEFYEIFE
EEEECCHHHHHHHHHHCCCEEEEEEHHHHHHHHHHHHHHHHHCCCEEEEEEHHHHHHHHH
KGDVNELSRFSRQLDIIAEDYRAQSVQ
CCCHHHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]