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The map label for this gene is xynB [H]

Identifier: 238916911

GI number: 238916911

Start: 994667

End: 996205

Strand: Direct

Name: xynB [H]

Synonym: EUBELI_00980

Alternate gene names: 238916911

Gene position: 994667-996205 (Clockwise)

Preceding gene: 238916910

Following gene: 238916912

Centisome position: 46.39

GC content: 39.9

Gene sequence:

>1539_bases
ATGAGTGATATGTATAACAATCCGGTACAGAGAGGATTCTTTCCAGATCCTTCGGTAGTAAGAGTTGGAGATGACTATTA
TATGGCTAATTCAACATTTCAGTATTTCCCTGCAATTGCAATCAGCCATTCCAAGGATATGATTCACTGGCATGTAATTG
GACATGCAATTACAGATTCAGAAGAACTTGATTTAAGAGATATTAAAGACTCACATGGCATATGGGCACCGGATATTAAT
TATGTTGATGGTAAATTCATTATAATGGCAACTTTAAGGCTTAACGGAGATGGCAAAAGAGATAATAATGTATTAAGACG
CCAGCTTGTTGTAACATCAGATAAGCCACAAGGACCATATTCAAAGCCAGCCTGGCTTGAGGTTGACAATATTGACCCAT
CTTTATTTGTTGATGATGACGGTAAGAAGTATCTTCTTATAAGTCCGGGAATCAATCTTTTACCACTCAGTGATGACTGC
ACTAAGGTTACAGGTGAAAGTGTGTGTGTATGGTCAGGAACTGGAGAGAGATGTCCGGAAGGACCACACATTTTTAAGAA
GGGTGAGTATTATTATGCAATGCTTGCGGAAGGCGGTACAGGCTATGGACATGGAATCAATGTTGCTCGTTCAAAGAATC
TGTATGGACCATATGAGGAATCACCATACAATCCTGTATTGAGACAGTTTAATCCAGATGCACCGATTCAGAGAACAGGA
CATGGCAATATAATTGAGACACAGGACGGAAGCTGGTGGTGCTATTATCTGTGTGGAAGACCTAATCAGGGCAATTATAC
AACAATAGGAAGAGAGACAGCACTTGACCCTGTAACATGGCTTTCAGATGGCTGGTTCGTGATTAATGACAGGAAAGGAC
CAAGCCTTACACAGAAAGCACCTGAATTACCTGAATGTACATTTGAAAAGTGGACAAGAGATGATTTTGATGATGATACT
CTTAATCTTAACTGGGAGTTTGTAAGAAATCCTGTTAAGGGTAATTATTCTCTTACAGAAAGAAAAGGATATTTAAGGCT
CTGGACAATGGACGGAACTCTTAATGAGATAAGGGCTAAGAATACTCTTGTAAGAAGAGAACAGGAATTATCGTATACAG
CACATACAAAGCTTGACTTCTATCCTGAAAAGGACGGAGAACAGGCAGGTCTTACCTGTTATTACAGTACTGCGACTTAT
GCAAGATTGTCATTGTGTTATGAGAATGGAAGAAAATTGCAGCTTGTGATTAACAGAAACCATGGCGAGGAGCTTATCTC
ACAGGTGGACAATATAAAGGAGCAGAGCATATACTTAAAGGTTGTAGTTGATAAACTGACAAGAAGCTTTTTCTACAGCT
ATGATGGTGAACAATGGGAACCAGCAGGAGTGCTTGAAAATTGCATATATCTGTGCGATGAGGGTGTGCCTGATGACAGA
AAGCGTCATACAGGAACGCTTGTTGGAATATATGCCAATAATGGTGGCTGCGGAAGCAGGATTCCGGCAGATTTTGATTA
TTTTGAATATGAGGACTAG

Upstream 100 bases:

>100_bases
GATATAGAAACAAAGGATATTTTTACAGGATATTTACTGAGAAATACAACATGACACCTGCAAAATTCAGAAAATATATT
AAAGAAAAGGAGTTTACGAT

Downstream 100 bases:

>100_bases
ATTTTATGAGTTTTGATTGTGTGGTTATAGGCGGAGGTGCAGCCGGAATGATGGCTGCCATACAATGTAAAGAGAATAAT
ATGCAGACTGTGATTATAGA

Product: glycoside hydrolase family 43 protein

Products: NA

Alternate protein names: 1,4-beta-D-xylan xylohydrolase; Xylan 1,4-beta-xylosidase [H]

Number of amino acids: Translated: 512; Mature: 511

Protein sequence:

>512_residues
MSDMYNNPVQRGFFPDPSVVRVGDDYYMANSTFQYFPAIAISHSKDMIHWHVIGHAITDSEELDLRDIKDSHGIWAPDIN
YVDGKFIIMATLRLNGDGKRDNNVLRRQLVVTSDKPQGPYSKPAWLEVDNIDPSLFVDDDGKKYLLISPGINLLPLSDDC
TKVTGESVCVWSGTGERCPEGPHIFKKGEYYYAMLAEGGTGYGHGINVARSKNLYGPYEESPYNPVLRQFNPDAPIQRTG
HGNIIETQDGSWWCYYLCGRPNQGNYTTIGRETALDPVTWLSDGWFVINDRKGPSLTQKAPELPECTFEKWTRDDFDDDT
LNLNWEFVRNPVKGNYSLTERKGYLRLWTMDGTLNEIRAKNTLVRREQELSYTAHTKLDFYPEKDGEQAGLTCYYSTATY
ARLSLCYENGRKLQLVINRNHGEELISQVDNIKEQSIYLKVVVDKLTRSFFYSYDGEQWEPAGVLENCIYLCDEGVPDDR
KRHTGTLVGIYANNGGCGSRIPADFDYFEYED

Sequences:

>Translated_512_residues
MSDMYNNPVQRGFFPDPSVVRVGDDYYMANSTFQYFPAIAISHSKDMIHWHVIGHAITDSEELDLRDIKDSHGIWAPDIN
YVDGKFIIMATLRLNGDGKRDNNVLRRQLVVTSDKPQGPYSKPAWLEVDNIDPSLFVDDDGKKYLLISPGINLLPLSDDC
TKVTGESVCVWSGTGERCPEGPHIFKKGEYYYAMLAEGGTGYGHGINVARSKNLYGPYEESPYNPVLRQFNPDAPIQRTG
HGNIIETQDGSWWCYYLCGRPNQGNYTTIGRETALDPVTWLSDGWFVINDRKGPSLTQKAPELPECTFEKWTRDDFDDDT
LNLNWEFVRNPVKGNYSLTERKGYLRLWTMDGTLNEIRAKNTLVRREQELSYTAHTKLDFYPEKDGEQAGLTCYYSTATY
ARLSLCYENGRKLQLVINRNHGEELISQVDNIKEQSIYLKVVVDKLTRSFFYSYDGEQWEPAGVLENCIYLCDEGVPDDR
KRHTGTLVGIYANNGGCGSRIPADFDYFEYED
>Mature_511_residues
SDMYNNPVQRGFFPDPSVVRVGDDYYMANSTFQYFPAIAISHSKDMIHWHVIGHAITDSEELDLRDIKDSHGIWAPDINY
VDGKFIIMATLRLNGDGKRDNNVLRRQLVVTSDKPQGPYSKPAWLEVDNIDPSLFVDDDGKKYLLISPGINLLPLSDDCT
KVTGESVCVWSGTGERCPEGPHIFKKGEYYYAMLAEGGTGYGHGINVARSKNLYGPYEESPYNPVLRQFNPDAPIQRTGH
GNIIETQDGSWWCYYLCGRPNQGNYTTIGRETALDPVTWLSDGWFVINDRKGPSLTQKAPELPECTFEKWTRDDFDDDTL
NLNWEFVRNPVKGNYSLTERKGYLRLWTMDGTLNEIRAKNTLVRREQELSYTAHTKLDFYPEKDGEQAGLTCYYSTATYA
RLSLCYENGRKLQLVINRNHGEELISQVDNIKEQSIYLKVVVDKLTRSFFYSYDGEQWEPAGVLENCIYLCDEGVPDDRK
RHTGTLVGIYANNGGCGSRIPADFDYFEYED

Specific function: Unknown

COG id: COG3507

COG function: function code G; Beta-xylosidase

Gene ontology:

Cell location: Cell membrane; Peripheral membrane protein (Probable) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the glycosyl hydrolase 43 family [H]

Homologues:

Organism=Escherichia coli, GI1786467, Length=539, Percent_Identity=35.0649350649351, Blast_Score=294, Evalue=7e-81,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008985
- InterPro:   IPR013320
- InterPro:   IPR006710 [H]

Pfam domain/function: PF04616 Glyco_hydro_43 [H]

EC number: =3.2.1.37 [H]

Molecular weight: Translated: 58418; Mature: 58286

Theoretical pI: Translated: 4.75; Mature: 4.75

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.1 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
2.2 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSDMYNNPVQRGFFPDPSVVRVGDDYYMANSTFQYFPAIAISHSKDMIHWHVIGHAITDS
CCCCCCCCHHCCCCCCCCEEEECCCEEEECCCEEECCEEEEECCCCEEEEEEEEEEECCC
EELDLRDIKDSHGIWAPDINYVDGKFIIMATLRLNGDGKRDNNVLRRQLVVTSDKPQGPY
CCCCHHHCCCCCCCCCCCCCCCCCEEEEEEEEEECCCCCCCCHHEEEEEEEECCCCCCCC
SKPAWLEVDNIDPSLFVDDDGKKYLLISPGINLLPLSDDCTKVTGESVCVWSGTGERCPE
CCCCEEEECCCCCEEEECCCCCEEEEECCCCEEEECCCCCCCCCCCEEEEECCCCCCCCC
GPHIFKKGEYYYAMLAEGGTGYGHGINVARSKNLYGPYEESPYNPVLRQFNPDAPIQRTG
CCCEEECCCEEEEEEECCCCCCCCCEEEEECCCCCCCCCCCCCCHHHHHCCCCCCCEECC
HGNIIETQDGSWWCYYLCGRPNQGNYTTIGRETALDPVTWLSDGWFVINDRKGPSLTQKA
CCCEEECCCCCEEEEEEECCCCCCCEEEECCCCCCCCEEEECCCEEEEECCCCCCHHHCC
PELPECTFEKWTRDDFDDDTLNLNWEFVRNPVKGNYSLTERKGYLRLWTMDGTLNEIRAK
CCCCCCHHHHCCCCCCCCCEEEEEEHHCCCCCCCCEEEEECCCEEEEEEECCCHHHHHHH
NTLVRREQELSYTAHTKLDFYPEKDGEQAGLTCYYSTATYARLSLCYENGRKLQLVINRN
HHHHHHHHHCCEEEEEEEEECCCCCCCCCCEEEEECCCCCEEEEEEECCCCEEEEEEECC
HGEELISQVDNIKEQSIYLKVVVDKLTRSFFYSYDGEQWEPAGVLENCIYLCDEGVPDDR
CHHHHHHHHHCCCHHEEEEEEHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCCCCCCC
KRHTGTLVGIYANNGGCGSRIPADFDYFEYED
CCCCCEEEEEEECCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
SDMYNNPVQRGFFPDPSVVRVGDDYYMANSTFQYFPAIAISHSKDMIHWHVIGHAITDS
CCCCCCCHHCCCCCCCCEEEECCCEEEECCCEEECCEEEEECCCCEEEEEEEEEEECCC
EELDLRDIKDSHGIWAPDINYVDGKFIIMATLRLNGDGKRDNNVLRRQLVVTSDKPQGPY
CCCCHHHCCCCCCCCCCCCCCCCCEEEEEEEEEECCCCCCCCHHEEEEEEEECCCCCCCC
SKPAWLEVDNIDPSLFVDDDGKKYLLISPGINLLPLSDDCTKVTGESVCVWSGTGERCPE
CCCCEEEECCCCCEEEECCCCCEEEEECCCCEEEECCCCCCCCCCCEEEEECCCCCCCCC
GPHIFKKGEYYYAMLAEGGTGYGHGINVARSKNLYGPYEESPYNPVLRQFNPDAPIQRTG
CCCEEECCCEEEEEEECCCCCCCCCEEEEECCCCCCCCCCCCCCHHHHHCCCCCCCEECC
HGNIIETQDGSWWCYYLCGRPNQGNYTTIGRETALDPVTWLSDGWFVINDRKGPSLTQKA
CCCEEECCCCCEEEEEEECCCCCCCEEEECCCCCCCCEEEECCCEEEEECCCCCCHHHCC
PELPECTFEKWTRDDFDDDTLNLNWEFVRNPVKGNYSLTERKGYLRLWTMDGTLNEIRAK
CCCCCCHHHHCCCCCCCCCEEEEEEHHCCCCCCCCEEEEECCCEEEEEEECCCHHHHHHH
NTLVRREQELSYTAHTKLDFYPEKDGEQAGLTCYYSTATYARLSLCYENGRKLQLVINRN
HHHHHHHHHCCEEEEEEEEECCCCCCCCCCEEEEECCCCCEEEEEEECCCCEEEEEEECC
HGEELISQVDNIKEQSIYLKVVVDKLTRSFFYSYDGEQWEPAGVLENCIYLCDEGVPDDR
CHHHHHHHHHCCCHHEEEEEEHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCCCCCCC
KRHTGTLVGIYANNGGCGSRIPADFDYFEYED
CCCCCEEEEEEECCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]