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The map label for this gene is ybeY [C]

Identifier: 238916903

GI number: 238916903

Start: 987895

End: 988404

Strand: Direct

Name: ybeY [C]

Synonym: EUBELI_00972

Alternate gene names: 238916903

Gene position: 987895-988404 (Clockwise)

Preceding gene: 238916902

Following gene: 238916904

Centisome position: 46.07

GC content: 37.45

Gene sequence:

>510_bases
ATGACTATTAATATAGAGTACGAAGCCGAGGAAAAGCTTGACTTAGATTATGAGAAGATAATTACTGATGTTGTCAATGA
GGCGGTTGATTATGAAAAATGTCCTTATGAAGCAGAGGTTAATGTAACAATTGTTGACAGTGAATCTATCCACGAGATTA
ATAAGGAATACAGAAATATTGATTCTCCGACAGATGTACTTTCATTTCCGGGAGTTAATTATGTTACACCTTCGGATTTT
GATGCAATTGAGGACGAGTTAGAAAACAATGCTGAGGATTATTTCAATCCTGATACAGGAGAGCTTCTTCTTGGAGATAT
TGTTCTGTGCGTTCAGAAGATTAAGGAACAGGCGGACAAGTATGGTCATTCTGAAAAAAGGGAGTTGGCATTTCTTACAG
CACACAGTATGATGCACCTTTTTGGTTATGACCACATGACACCAGAAGAAAGTGCAGTTATGGAAGCAAAGCAGAATGAA
GTACTTGAAAGACTTGGAATTACCCGTTAA

Upstream 100 bases:

>100_bases
ATTGTCAAGGCATATGAGGATTACGAGGAGAATCAGGCTAAGGCTGCCAAGAGAAGAGAAGCAAGAAAGGGAAGTCAGAC
AGGAAGGAGAAAAAATTGAT

Downstream 100 bases:

>100_bases
GAGGTGACATATATGACAGATAATGAACTTGTTGCTAAAGCTAAAGAGGCACTTGAGAACTCATATTCACCGTATTCACA
TTTTGCAGTTGGTGCGGCAC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 169; Mature: 168

Protein sequence:

>169_residues
MTINIEYEAEEKLDLDYEKIITDVVNEAVDYEKCPYEAEVNVTIVDSESIHEINKEYRNIDSPTDVLSFPGVNYVTPSDF
DAIEDELENNAEDYFNPDTGELLLGDIVLCVQKIKEQADKYGHSEKRELAFLTAHSMMHLFGYDHMTPEESAVMEAKQNE
VLERLGITR

Sequences:

>Translated_169_residues
MTINIEYEAEEKLDLDYEKIITDVVNEAVDYEKCPYEAEVNVTIVDSESIHEINKEYRNIDSPTDVLSFPGVNYVTPSDF
DAIEDELENNAEDYFNPDTGELLLGDIVLCVQKIKEQADKYGHSEKRELAFLTAHSMMHLFGYDHMTPEESAVMEAKQNE
VLERLGITR
>Mature_168_residues
TINIEYEAEEKLDLDYEKIITDVVNEAVDYEKCPYEAEVNVTIVDSESIHEINKEYRNIDSPTDVLSFPGVNYVTPSDFD
AIEDELENNAEDYFNPDTGELLLGDIVLCVQKIKEQADKYGHSEKRELAFLTAHSMMHLFGYDHMTPEESAVMEAKQNEV
LERLGITR

Specific function: Involved in rRNA and/or ribosome maturation and assembly. Required for normal 5' and 3' processing of 16S, 23S and 5S rRNAs. May have metal-dependent hydrolase activity

COG id: COG0319

COG function: function code R; Predicted metal-dependent hydrolase

Gene ontology:

Cell location: Cytoplasm

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rRNA maturation factor YbeY family

Homologues:

Organism=Escherichia coli, GI1786880, Length=130, Percent_Identity=33.0769230769231, Blast_Score=68, Evalue=3e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RRMF_EUBE2 (C4Z060)

Other databases:

- EMBL:   CP001104
- RefSeq:   YP_002930420.1
- ProteinModelPortal:   C4Z060
- GeneID:   7957833
- GenomeReviews:   CP001104_GR
- KEGG:   eel:EUBELI_00972
- OMA:   HGILHIT
- ProtClustDB:   CLSK2506291
- HAMAP:   MF_00009
- InterPro:   IPR023091
- InterPro:   IPR002036
- Gene3D:   G3DSA:3.40.390.30
- TIGRFAMs:   TIGR00043

Pfam domain/function: PF02130 UPF0054

EC number: NA

Molecular weight: Translated: 19389; Mature: 19257

Theoretical pI: Translated: 3.95; Mature: 3.95

Prosite motif: PS01306 UPF0054

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTINIEYEAEEKLDLDYEKIITDVVNEAVDYEKCPYEAEVNVTIVDSESIHEINKEYRNI
CEEEEEECCCCCCCCCHHHHHHHHHHHHHCHHCCCCCCCEEEEEECCHHHHHHHHHHHCC
DSPTDVLSFPGVNYVTPSDFDAIEDELENNAEDYFNPDTGELLLGDIVLCVQKIKEQADK
CCCHHHHHCCCCCCCCCCCHHHHHHHHHCCHHHCCCCCCHHHHHHHHHHHHHHHHHHHHH
YGHSEKRELAFLTAHSMMHLFGYDHMTPEESAVMEAKQNEVLERLGITR
CCCCCHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure 
TINIEYEAEEKLDLDYEKIITDVVNEAVDYEKCPYEAEVNVTIVDSESIHEINKEYRNI
EEEEEECCCCCCCCCHHHHHHHHHHHHHCHHCCCCCCCEEEEEECCHHHHHHHHHHHCC
DSPTDVLSFPGVNYVTPSDFDAIEDELENNAEDYFNPDTGELLLGDIVLCVQKIKEQADK
CCCHHHHHCCCCCCCCCCCHHHHHHHHHCCHHHCCCCCCHHHHHHHHHHHHHHHHHHHHH
YGHSEKRELAFLTAHSMMHLFGYDHMTPEESAVMEAKQNEVLERLGITR
CCCCCHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA