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The map label for this gene is ypdB [C]

Identifier: 238916800

GI number: 238916800

Start: 882083

End: 882793

Strand: Direct

Name: ypdB [C]

Synonym: EUBELI_00867

Alternate gene names: 238916800

Gene position: 882083-882793 (Clockwise)

Preceding gene: 238916799

Following gene: 238916801

Centisome position: 41.14

GC content: 34.88

Gene sequence:

>711_bases
ATGAAAGTGGCAGTATGTGATGACAACAGAGAGTTCTGTGAGAAGGAACGGACGACTATAAAAGATGTATTTAAGCAGTA
TTTTCAGGGAGAAGATTGTCAGGTGGATATCTACAATGACGGTCAGACAATTATTAGTAATTATTCAGACAATGCTTATG
ATATGGTATTTCTTGATCTTGAACTGGGCGATGAGAATGGATTTGATATTGCGGAACAGATAGTATTAATGAATAATGAC
GCAATTATAATATTTGTTACATCTCATGAGAATCTGGTTTATGAAGCATTCAGATTCAGACCGCTTGGGTATATAGTTAA
AGACAGATTTGACCGTGAATTTACAAGAATGATGGTAAAGATAGTTGATAAACTGATAAAGATGAGGCAGGTAATAGAAC
TGGGTGGAGAGAAATTCTATGTTGACAGGGTTGTTTCAATTGCAACGCAGAAAAGGAAGATATGTGTCAAAAGTCTTAAA
GGAGAAATATTATTGGCAGATTCGTATAGTAAGCATGTTGCAGAGCTTGAAAAATATGGATTTGTGCAGTCAAGCAAGGG
TGTGCTTATTAATATGAAATATATTAAGAGCATTGATGAAGATAACGATGTATTTGTGATGTATAATAATGAGCGCGTTC
CTATAAGCAGGCGCAGGAAGAAAGATGTCATAGAAGAATACAGAAAATTCATGTTTGATAATAACAGGTAG

Upstream 100 bases:

>100_bases
TTAGGACATGCCATAACCATTGAGTCGGTAAAGGGCGAATATACACGGGTGAAGATTACATTTTACAAGAATGATTTCTA
TAAGGAGATAACAGACAGCA

Downstream 100 bases:

>100_bases
GAAACAGGTATGATGGATATAATCAATATAGTGCTTACATGTGTATTCCTGTGTGTAATGAATACAGGTGTAATATTTAT
TATGGACAAGATAAGGAAGC

Product: hypothetical protein

Products: NA

Alternate protein names: Two Component Transcriptional Regulator LytTR Family; LytTR Family Two Component Transcriptional Regulator; Response Regulator; Two-Component System Response Regulator; Two-Component System LytT Family Response Regulator LytT; Response Regulator Receiver Protein; Two Component System Response Regulator; Two-Component System LytT Family Response Regulator; Response Regulator Of Lytr/Algr Family; VirR Protein; Response Regulator Of LytR/AlgR Family; Two-Component Response Regulator VirR; Response Regulator Protein; Two-Component Response Regulator LytT; Sensory Transduction Protein

Number of amino acids: Translated: 236; Mature: 236

Protein sequence:

>236_residues
MKVAVCDDNREFCEKERTTIKDVFKQYFQGEDCQVDIYNDGQTIISNYSDNAYDMVFLDLELGDENGFDIAEQIVLMNND
AIIIFVTSHENLVYEAFRFRPLGYIVKDRFDREFTRMMVKIVDKLIKMRQVIELGGEKFYVDRVVSIATQKRKICVKSLK
GEILLADSYSKHVAELEKYGFVQSSKGVLINMKYIKSIDEDNDVFVMYNNERVPISRRRKKDVIEEYRKFMFDNNR

Sequences:

>Translated_236_residues
MKVAVCDDNREFCEKERTTIKDVFKQYFQGEDCQVDIYNDGQTIISNYSDNAYDMVFLDLELGDENGFDIAEQIVLMNND
AIIIFVTSHENLVYEAFRFRPLGYIVKDRFDREFTRMMVKIVDKLIKMRQVIELGGEKFYVDRVVSIATQKRKICVKSLK
GEILLADSYSKHVAELEKYGFVQSSKGVLINMKYIKSIDEDNDVFVMYNNERVPISRRRKKDVIEEYRKFMFDNNR
>Mature_236_residues
MKVAVCDDNREFCEKERTTIKDVFKQYFQGEDCQVDIYNDGQTIISNYSDNAYDMVFLDLELGDENGFDIAEQIVLMNND
AIIIFVTSHENLVYEAFRFRPLGYIVKDRFDREFTRMMVKIVDKLIKMRQVIELGGEKFYVDRVVSIATQKRKICVKSLK
GEILLADSYSKHVAELEKYGFVQSSKGVLINMKYIKSIDEDNDVFVMYNNERVPISRRRKKDVIEEYRKFMFDNNR

Specific function: Unknown

COG id: COG3279

COG function: function code KT; Response regulator of the LytR/AlgR family

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 27875; Mature: 27875

Theoretical pI: Translated: 5.27; Mature: 5.27

Prosite motif: PS50110 RESPONSE_REGULATORY

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
5.5 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
3.8 %Met     (Mature Protein)
5.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKVAVCDDNREFCEKERTTIKDVFKQYFQGEDCQVDIYNDGQTIISNYSDNAYDMVFLDL
CEEEEECCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCHHEECCCCCCCEEEEEEEE
ELGDENGFDIAEQIVLMNNDAIIIFVTSHENLVYEAFRFRPLGYIVKDRFDREFTRMMVK
EECCCCCCCHHHEEEEECCCEEEEEEECCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
IVDKLIKMRQVIELGGEKFYVDRVVSIATQKRKICVKSLKGEILLADSYSKHVAELEKYG
HHHHHHHHHHHHHHCCCEEHHHHHHHHHHHHHHHHHHHCCCCEEEECCHHHHHHHHHHHC
FVQSSKGVLINMKYIKSIDEDNDVFVMYNNERVPISRRRKKDVIEEYRKFMFDNNR
CEECCCCEEEEEHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure
MKVAVCDDNREFCEKERTTIKDVFKQYFQGEDCQVDIYNDGQTIISNYSDNAYDMVFLDL
CEEEEECCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCHHEECCCCCCCEEEEEEEE
ELGDENGFDIAEQIVLMNNDAIIIFVTSHENLVYEAFRFRPLGYIVKDRFDREFTRMMVK
EECCCCCCCHHHEEEEECCCEEEEEEECCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
IVDKLIKMRQVIELGGEKFYVDRVVSIATQKRKICVKSLKGEILLADSYSKHVAELEKYG
HHHHHHHHHHHHHHCCCEEHHHHHHHHHHHHHHHHHHHCCCCEEEECCHHHHHHHHHHHC
FVQSSKGVLINMKYIKSIDEDNDVFVMYNNERVPISRRRKKDVIEEYRKFMFDNNR
CEECCCCEEEEEHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA