Click here to switch to the map view.

The map label for this gene is ytrA [H]

Identifier: 238916566

GI number: 238916566

Start: 632616

End: 632996

Strand: Direct

Name: ytrA [H]

Synonym: EUBELI_00623

Alternate gene names: 238916566

Gene position: 632616-632996 (Clockwise)

Preceding gene: 238916565

Following gene: 238916567

Centisome position: 29.5

GC content: 40.16

Gene sequence:

>381_bases
ATGAGCATTAATATAAATATCCTGCCACAGGGAACGCTTGCAATATACGAGCAGATAATAATGCAGCTTAAGAATGCGAT
AGTAACTGGGGAACTGAAATCCGGCGAGGCACTTCCTTCAATAAGGGCGTTGGCAGCAGACCTGCAGGTAAGTGTGATAA
CAACCAAGAGGGCTTATGAAGAACTTGAAAAAGAAGGGCTTATCCGCTCAGTTGCTGGAAAAGGATTTTATGTGTGTGAA
TACAACACAGATTATCTGAAAGAAAAGCAGCTTATGATGATAGAAAAGAGAACTCAGGAAATCATATATGAAGCAAAAAA
TGCAGGGCTTTCCTGTGATGATTTAGTGGATATGATTCGCACTTTGTATGAGGAGAAATAG

Upstream 100 bases:

>100_bases
ATTCAATAATGGTGCTTATAGAGTTTCCAGTATGCATAGGTTATGCAAGGCAGGTAAAAAGAAAGCTTAAGTCAGCGGCA
GTTTATGAAGAGGTGGTTTT

Downstream 100 bases:

>100_bases
AAATGGAGAATATTGCACTGACATTAGAAAATGTTACAGGAAAAGGACTTGGATTTAAATTAAAAGACATAAGTGCGAAA
TTTGAGAATGGATACATATA

Product: GntR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 126; Mature: 125

Protein sequence:

>126_residues
MSININILPQGTLAIYEQIIMQLKNAIVTGELKSGEALPSIRALAADLQVSVITTKRAYEELEKEGLIRSVAGKGFYVCE
YNTDYLKEKQLMMIEKRTQEIIYEAKNAGLSCDDLVDMIRTLYEEK

Sequences:

>Translated_126_residues
MSININILPQGTLAIYEQIIMQLKNAIVTGELKSGEALPSIRALAADLQVSVITTKRAYEELEKEGLIRSVAGKGFYVCE
YNTDYLKEKQLMMIEKRTQEIIYEAKNAGLSCDDLVDMIRTLYEEK
>Mature_125_residues
SININILPQGTLAIYEQIIMQLKNAIVTGELKSGEALPSIRALAADLQVSVITTKRAYEELEKEGLIRSVAGKGFYVCEY
NTDYLKEKQLMMIEKRTQEIIYEAKNAGLSCDDLVDMIRTLYEEK

Specific function: Negatively regulates ABC transporter complex ytrBCDEF that plays a role in acetoin utilization during stationary phase and sporulation [H]

COG id: COG1725

COG function: function code K; Predicted transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000524
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00392 GntR [H]

EC number: NA

Molecular weight: Translated: 14253; Mature: 14122

Theoretical pI: Translated: 4.64; Mature: 4.64

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
4.0 %Met     (Translated Protein)
5.6 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
4.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSININILPQGTLAIYEQIIMQLKNAIVTGELKSGEALPSIRALAADLQVSVITTKRAYE
CEEEEEEECCCHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHEEEEEHHHHHHH
ELEKEGLIRSVAGKGFYVCEYNTDYLKEKQLMMIEKRTQEIIYEAKNAGLSCDDLVDMIR
HHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHH
TLYEEK
HHHCCC
>Mature Secondary Structure 
SININILPQGTLAIYEQIIMQLKNAIVTGELKSGEALPSIRALAADLQVSVITTKRAYE
EEEEEEECCCHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHEEEEEHHHHHHH
ELEKEGLIRSVAGKGFYVCEYNTDYLKEKQLMMIEKRTQEIIYEAKNAGLSCDDLVDMIR
HHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHH
TLYEEK
HHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9387221; 9384377 [H]