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The map label for this gene is ytrB [H]

Identifier: 238916567

GI number: 238916567

Start: 632999

End: 633658

Strand: Direct

Name: ytrB [H]

Synonym: EUBELI_00624

Alternate gene names: 238916567

Gene position: 632999-633658 (Clockwise)

Preceding gene: 238916566

Following gene: 238916568

Centisome position: 29.52

GC content: 38.79

Gene sequence:

>660_bases
ATGGAGAATATTGCACTGACATTAGAAAATGTTACAGGAAAAGGACTTGGATTTAAATTAAAAGACATAAGTGCGAAATT
TGAGAATGGATACATATATGCAATTACAGGTAAGAATGGTGCCGGCAAAACTACATTGTTTAATTACATTTTAGCACAGA
GAAAACAGTACACAGGAAGCATAAAGATGTCTGGCTATGAGCTTGAAAGGAATCATTCAAAAGCAATGGAAATCATTGGC
TTTGTGTCAGAGGATAATGTATTCTTCGAGAACCGTACCGGAAAGCAGAATGCTGATATACTGGGACTTGTGTATGATGA
TTTTGATGTGGAACTGTTTAATGAATGTATGAAAAAGATGAATGTCAGCACTGCAACGACATTGTGGCGTATGTCAAGAG
GTGAGCGTATGAAGTTCCAGCTTGCGTTTGCAATAGCACATCACAGCAGGCTGTATCTTCTTGATGAAGCAACAGCAGGC
ATGGATGCAGTGTTTAAGATAGAATTATTTGACATGTTAAGAGAACTTATAGCACAGGAATGCTGTGTGATTATGACAAC
ACATGACATGACAGAGATTATGAAGAATACGGATTATGTGGCAGTTATGGAGGGCGGCAGACTGGGAGAGTTCAGCGAAA
GTATTGAATGCACAGTGTGA

Upstream 100 bases:

>100_bases
AAAAGAGAACTCAGGAAATCATATATGAAGCAAAAAATGCAGGGCTTTCCTGTGATGATTTAGTGGATATGATTCGCACT
TTGTATGAGGAGAAATAGAA

Downstream 100 bases:

>100_bases
GAACAGCGCAGGAAAGAGGAGAAAATGACTATCAAAACAGATATCAAACAGCAGAAAAAATTAGAAAAGTTCTTTAAAGA
AGAAAATACATGGTTTCCGG

Product: ABC-2 type transport system ATP-binding protein

Products: Zn (II) [Cytoplasm]; ADP; phosphate [C]

Alternate protein names: NA

Number of amino acids: Translated: 219; Mature: 219

Protein sequence:

>219_residues
MENIALTLENVTGKGLGFKLKDISAKFENGYIYAITGKNGAGKTTLFNYILAQRKQYTGSIKMSGYELERNHSKAMEIIG
FVSEDNVFFENRTGKQNADILGLVYDDFDVELFNECMKKMNVSTATTLWRMSRGERMKFQLAFAIAHHSRLYLLDEATAG
MDAVFKIELFDMLRELIAQECCVIMTTHDMTEIMKNTDYVAVMEGGRLGEFSESIECTV

Sequences:

>Translated_219_residues
MENIALTLENVTGKGLGFKLKDISAKFENGYIYAITGKNGAGKTTLFNYILAQRKQYTGSIKMSGYELERNHSKAMEIIG
FVSEDNVFFENRTGKQNADILGLVYDDFDVELFNECMKKMNVSTATTLWRMSRGERMKFQLAFAIAHHSRLYLLDEATAG
MDAVFKIELFDMLRELIAQECCVIMTTHDMTEIMKNTDYVAVMEGGRLGEFSESIECTV
>Mature_219_residues
MENIALTLENVTGKGLGFKLKDISAKFENGYIYAITGKNGAGKTTLFNYILAQRKQYTGSIKMSGYELERNHSKAMEIIG
FVSEDNVFFENRTGKQNADILGLVYDDFDVELFNECMKKMNVSTATTLWRMSRGERMKFQLAFAIAHHSRLYLLDEATAG
MDAVFKIELFDMLRELIAQECCVIMTTHDMTEIMKNTDYVAVMEGGRLGEFSESIECTV

Specific function: Part of the ABC transporter complex YtrBCDEF that plays a role in acetoin utilization during stationary phase and sporulation [H]

COG id: COG1131

COG function: function code V; ABC-type multidrug transport system, ATPase component

Gene ontology:

Cell location: Cell membrane; Peripheral membrane protein; Cytoplasmic side (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transporter domain [H]

Homologues:

Organism=Homo sapiens, GI116734710, Length=198, Percent_Identity=25.7575757575758, Blast_Score=75, Evalue=6e-14,
Organism=Homo sapiens, GI6005701, Length=194, Percent_Identity=26.2886597938144, Blast_Score=65, Evalue=6e-11,
Organism=Homo sapiens, GI90421313, Length=211, Percent_Identity=28.9099526066351, Blast_Score=64, Evalue=1e-10,
Organism=Escherichia coli, GI1788165, Length=208, Percent_Identity=30.2884615384615, Blast_Score=80, Evalue=1e-16,
Organism=Escherichia coli, GI1786319, Length=220, Percent_Identity=27.7272727272727, Blast_Score=72, Evalue=3e-14,
Organism=Escherichia coli, GI1786563, Length=206, Percent_Identity=29.126213592233, Blast_Score=69, Evalue=2e-13,
Organism=Escherichia coli, GI1790190, Length=237, Percent_Identity=25.7383966244726, Blast_Score=69, Evalue=3e-13,
Organism=Escherichia coli, GI1789991, Length=209, Percent_Identity=26.3157894736842, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI87081782, Length=181, Percent_Identity=24.3093922651934, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI1787792, Length=195, Percent_Identity=25.1282051282051, Blast_Score=65, Evalue=2e-12,
Organism=Escherichia coli, GI1789593, Length=197, Percent_Identity=25.3807106598985, Blast_Score=65, Evalue=3e-12,
Organism=Escherichia coli, GI87082268, Length=215, Percent_Identity=24.6511627906977, Blast_Score=65, Evalue=4e-12,
Organism=Escherichia coli, GI1790525, Length=225, Percent_Identity=24.8888888888889, Blast_Score=63, Evalue=2e-11,
Organism=Escherichia coli, GI1788225, Length=207, Percent_Identity=25.6038647342995, Blast_Score=62, Evalue=2e-11,
Organism=Escherichia coli, GI1788897, Length=220, Percent_Identity=25, Blast_Score=62, Evalue=3e-11,
Organism=Caenorhabditis elegans, GI17510237, Length=194, Percent_Identity=26.8041237113402, Blast_Score=74, Evalue=5e-14,
Organism=Caenorhabditis elegans, GI71988343, Length=209, Percent_Identity=29.6650717703349, Blast_Score=69, Evalue=3e-12,
Organism=Caenorhabditis elegans, GI115533608, Length=198, Percent_Identity=26.2626262626263, Blast_Score=66, Evalue=1e-11,
Organism=Drosophila melanogaster, GI24666092, Length=181, Percent_Identity=29.2817679558011, Blast_Score=81, Evalue=4e-16,
Organism=Drosophila melanogaster, GI28574150, Length=201, Percent_Identity=28.3582089552239, Blast_Score=74, Evalue=8e-14,
Organism=Drosophila melanogaster, GI116007328, Length=201, Percent_Identity=28.3582089552239, Blast_Score=74, Evalue=9e-14,
Organism=Drosophila melanogaster, GI221512771, Length=196, Percent_Identity=27.0408163265306, Blast_Score=72, Evalue=3e-13,
Organism=Drosophila melanogaster, GI161076684, Length=204, Percent_Identity=27.9411764705882, Blast_Score=71, Evalue=7e-13,
Organism=Drosophila melanogaster, GI24581617, Length=204, Percent_Identity=27.9411764705882, Blast_Score=71, Evalue=7e-13,
Organism=Drosophila melanogaster, GI24581615, Length=204, Percent_Identity=27.9411764705882, Blast_Score=71, Evalue=7e-13,
Organism=Drosophila melanogaster, GI161076682, Length=204, Percent_Identity=27.9411764705882, Blast_Score=70, Evalue=8e-13,
Organism=Drosophila melanogaster, GI24582014, Length=195, Percent_Identity=27.1794871794872, Blast_Score=70, Evalue=1e-12,
Organism=Drosophila melanogaster, GI24582012, Length=195, Percent_Identity=27.1794871794872, Blast_Score=70, Evalue=1e-12,
Organism=Drosophila melanogaster, GI85725262, Length=195, Percent_Identity=26.1538461538462, Blast_Score=64, Evalue=1e-10,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003439
- InterPro:   IPR003593 [H]

Pfam domain/function: PF00005 ABC_tran [H]

EC number: NA

Molecular weight: Translated: 24810; Mature: 24810

Theoretical pI: Translated: 4.99; Mature: 4.99

Prosite motif: PS50893 ABC_TRANSPORTER_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
5.9 %Met     (Translated Protein)
7.8 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
5.9 %Met     (Mature Protein)
7.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MENIALTLENVTGKGLGFKLKDISAKFENGYIYAITGKNGAGKTTLFNYILAQRKQYTGS
CCCEEEEEECCCCCCCCEEEEECCEEECCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCE
IKMSGYELERNHSKAMEIIGFVSEDNVFFENRTGKQNADILGLVYDDFDVELFNECMKKM
EEECCEEECCCHHHHHHHEEEEECCCEEEECCCCCCCCCEEEEEECCCCHHHHHHHHHHC
NVSTATTLWRMSRGERMKFQLAFAIAHHSRLYLLDEATAGMDAVFKIELFDMLRELIAQE
CCCHHHHHHHHCCCCCEEEEEEEEEECCCEEEEEECCCCCCCEEEEEHHHHHHHHHHHCC
CCVIMTTHDMTEIMKNTDYVAVMEGGRLGEFSESIECTV
CEEEEEECHHHHHHHCCCEEEEEECCCCCCCCCCCEECC
>Mature Secondary Structure
MENIALTLENVTGKGLGFKLKDISAKFENGYIYAITGKNGAGKTTLFNYILAQRKQYTGS
CCCEEEEEECCCCCCCCEEEEECCEEECCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCE
IKMSGYELERNHSKAMEIIGFVSEDNVFFENRTGKQNADILGLVYDDFDVELFNECMKKM
EEECCEEECCCHHHHHHHEEEEECCCEEEECCCCCCCCCEEEEEECCCCHHHHHHHHHHC
NVSTATTLWRMSRGERMKFQLAFAIAHHSRLYLLDEATAGMDAVFKIELFDMLRELIAQE
CCCHHHHHHHHCCCCCEEEEEEEEEECCCEEEEEECCCCCCCEEEEEHHHHHHHHHHHCC
CCVIMTTHDMTEIMKNTDYVAVMEGGRLGEFSESIECTV
CEEEEEECHHHHHHHCCCEEEEEECCCCCCCCCCCEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: Zn (II) [Periplasm]; H2O; ATP [C]

Specific reaction: Zn (II) [Periplasm] + H2O + ATP = Zn (II) [Cytoplasm] + ADP + phosphate [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9387221; 9384377 [H]