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The map label for this gene is deoC

Identifier: 238916439

GI number: 238916439

Start: 502755

End: 503402

Strand: Direct

Name: deoC

Synonym: EUBELI_00496

Alternate gene names: 238916439

Gene position: 502755-503402 (Clockwise)

Preceding gene: 238916438

Following gene: 238916441

Centisome position: 23.45

GC content: 40.43

Gene sequence:

>648_bases
ATGAAGTTTAATAAATATTTTGACCATACGAACTTAAAGCCGGACGCAACTAAGGATGATATCCGAACATTATGTGAAGA
AGCAAAAAAGTATGATTTTGCATCAGTATGTGTAAATGGAATATATACTGCATTTGCAAAACAATGCCTTTCCGGAAGTG
ATGTTAAGACATGTGTTGTAGTTGGTTTTCCGCTGGGAGCTATGAGCACAGACGTTAAGGCTTATGAGACTAAGAAAGCC
GTAGAAGATGGTGCGGATGAGATTGATATGGTTATTCCTGTAGGACTTCTTAAAGCAGGCGAATATGATGCTGTGTATGA
GGATATTAAAGCAGTAAGGGATGCATGTGCAGGAAAAGTTTTAAAGGTTATATTTGAGAACTGTCTTCTTACAGATGAGG
AGAAAATTAAGGCGTGCGAACTGTCTGTTAAGGCAGGAGCTGATTACGTCAAGACTTCAACAGGATTCTCTACAGGTGGT
GCAACAATAAGTGATGTTGCACTTATGAAAGCTCACGTAGAAGGAAAGTGTAAGGTTAAGGCAGCAGGCGGAATAAGAGA
TTACAACACAGCAGCTGCCATGATAGATGCCGGAGCTGACAGGCTCGGAACAAGCGCTACAATTAAGATTATGGAAGGAA
GGCAATAA

Upstream 100 bases:

>100_bases
AGAAAGAGTAATTTTTCTAAATAATAACAATTAATATTACCGTATCTGCAGTACAACAGTTTTGCAGATACGGTCTTTTT
ATAGGTAATTGGAGGAACAT

Downstream 100 bases:

>100_bases
AATTACTGCTTATTCCTTCCTGAAAGAATCTTGTATACAAGTGTCATTGCATATATTACAACAGGAAATACAATGTCTGT
GAAGAGCAGACCGGTAAATA

Product: deoxyribose-phosphate aldolase

Products: NA

Alternate protein names: Phosphodeoxyriboaldolase; DERA; Deoxyriboaldolase

Number of amino acids: Translated: 215; Mature: 215

Protein sequence:

>215_residues
MKFNKYFDHTNLKPDATKDDIRTLCEEAKKYDFASVCVNGIYTAFAKQCLSGSDVKTCVVVGFPLGAMSTDVKAYETKKA
VEDGADEIDMVIPVGLLKAGEYDAVYEDIKAVRDACAGKVLKVIFENCLLTDEEKIKACELSVKAGADYVKTSTGFSTGG
ATISDVALMKAHVEGKCKVKAAGGIRDYNTAAAMIDAGADRLGTSATIKIMEGRQ

Sequences:

>Translated_215_residues
MKFNKYFDHTNLKPDATKDDIRTLCEEAKKYDFASVCVNGIYTAFAKQCLSGSDVKTCVVVGFPLGAMSTDVKAYETKKA
VEDGADEIDMVIPVGLLKAGEYDAVYEDIKAVRDACAGKVLKVIFENCLLTDEEKIKACELSVKAGADYVKTSTGFSTGG
ATISDVALMKAHVEGKCKVKAAGGIRDYNTAAAMIDAGADRLGTSATIKIMEGRQ
>Mature_215_residues
MKFNKYFDHTNLKPDATKDDIRTLCEEAKKYDFASVCVNGIYTAFAKQCLSGSDVKTCVVVGFPLGAMSTDVKAYETKKA
VEDGADEIDMVIPVGLLKAGEYDAVYEDIKAVRDACAGKVLKVIFENCLLTDEEKIKACELSVKAGADYVKTSTGFSTGG
ATISDVALMKAHVEGKCKVKAAGGIRDYNTAAAMIDAGADRLGTSATIKIMEGRQ

Specific function: Nucleotide and deoxyribonucleotide catabolism. [C]

COG id: COG0274

COG function: function code F; Deoxyribose-phosphate aldolase

Gene ontology:

Cell location: Cytoplasm

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the deoC/fbaB aldolase family. DeoC type 1 subfamily

Homologues:

Organism=Homo sapiens, GI116063554, Length=230, Percent_Identity=31.7391304347826, Blast_Score=87, Evalue=1e-17,
Organism=Escherichia coli, GI1790841, Length=195, Percent_Identity=35.8974358974359, Blast_Score=86, Evalue=1e-18,
Organism=Caenorhabditis elegans, GI17533015, Length=220, Percent_Identity=30.4545454545455, Blast_Score=67, Evalue=5e-12,
Organism=Drosophila melanogaster, GI19922098, Length=230, Percent_Identity=29.5652173913043, Blast_Score=65, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): DEOC_EUBE2 (C4Z3P0)

Other databases:

- EMBL:   CP001104
- RefSeq:   YP_002929956.1
- ProteinModelPortal:   C4Z3P0
- GeneID:   7957608
- GenomeReviews:   CP001104_GR
- KEGG:   eel:EUBELI_00496
- OMA:   GANTPEV
- GO:   GO:0005737
- HAMAP:   MF_00114
- InterPro:   IPR013785
- InterPro:   IPR011343
- InterPro:   IPR002915
- InterPro:   IPR022979
- Gene3D:   G3DSA:3.20.20.70
- PANTHER:   PTHR10889
- PIRSF:   PIRSF001357
- TIGRFAMs:   TIGR00126

Pfam domain/function: PF01791 DeoC

EC number: =4.1.2.4

Molecular weight: Translated: 22998; Mature: 22998

Theoretical pI: Translated: 5.42; Mature: 5.42

Prosite motif: NA

Important sites: ACT_SITE 151-151 ACT_SITE 180-180

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.7 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
6.5 %Cys+Met (Translated Protein)
3.7 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
6.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKFNKYFDHTNLKPDATKDDIRTLCEEAKKYDFASVCVNGIYTAFAKQCLSGSDVKTCVV
CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCEEEE
VGFPLGAMSTDVKAYETKKAVEDGADEIDMVIPVGLLKAGEYDAVYEDIKAVRDACAGKV
EECCCCCCCCCHHHHHHHHHHHCCCCCEEEEECHHHHCCCCHHHHHHHHHHHHHHHHHHH
LKVIFENCLLTDEEKIKACELSVKAGADYVKTSTGFSTGGATISDVALMKAHVEGKCKVK
HHHHHHHHCCCCHHHHHHHEEEHHCCCCEEECCCCCCCCCCHHHHHHHHHHCCCCEEEEE
AAGGIRDYNTAAAMIDAGADRLGTSATIKIMEGRQ
ECCCCCCCHHHHHHHHCCHHHCCCCEEEEEECCCC
>Mature Secondary Structure
MKFNKYFDHTNLKPDATKDDIRTLCEEAKKYDFASVCVNGIYTAFAKQCLSGSDVKTCVV
CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCEEEE
VGFPLGAMSTDVKAYETKKAVEDGADEIDMVIPVGLLKAGEYDAVYEDIKAVRDACAGKV
EECCCCCCCCCHHHHHHHHHHHCCCCCEEEEECHHHHCCCCHHHHHHHHHHHHHHHHHHH
LKVIFENCLLTDEEKIKACELSVKAGADYVKTSTGFSTGGATISDVALMKAHVEGKCKVK
HHHHHHHHCCCCHHHHHHHEEEHHCCCCEEECCCCCCCCCCHHHHHHHHHHCCCCEEEEE
AAGGIRDYNTAAAMIDAGADRLGTSATIKIMEGRQ
ECCCCCCCHHHHHHHHCCHHHCCCCEEEEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA