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The map label for this gene is dapF [H]

Identifier: 238916379

GI number: 238916379

Start: 446039

End: 446956

Strand: Direct

Name: dapF [H]

Synonym: EUBELI_00433

Alternate gene names: 238916379

Gene position: 446039-446956 (Clockwise)

Preceding gene: 238916378

Following gene: 238916380

Centisome position: 20.8

GC content: 39.98

Gene sequence:

>918_bases
ATGAAAAGGAGACCAGGTATGAAGTTTACTAAAATGCATGGAGCAGGCAACGACTACATATACGTAGACTGCACACAGTC
GGTAATTGATAATCCGTCACAGGTCGCAATTGATTTAAGTGACAGACATTTTGGAATAGGTTCAGATGGACTTATTCTTA
TTAAGAACTCAGATAAAGCTGATTTCTTTATGGAGATGTACAACGCAGATGGTTCGCAGGGACAGATGTGTGGCAATGGA
ATAAGATGTGTTGGAAAGTTCGTATATGACAACGGACTTACAGATAAAACAACAGTTACTATTGATACACTTGCAGGTGT
GAAGATACTTGAGCTTAAAACTGGTGCAGATGGCAAGGTTGAGACGGCAAGGGTTAACATGGGCGCACCAATTCTTGAGG
CAGCACAGATTCCTGTCGATACGAAGGGACTTAAAGAATATAAAGGCTGTGAGATAGAGACAATTGCCGGAAAGGTTGTT
AAGACACCTGTTGTGGATGAGACTATTGTTGTAGAAGGTAAGGAGTACAAGGTAACAGCAGTTTCAATGGGTAATCCTCA
TGCTATTGTTTATCTTGATAAAGATATTGATATTAAGAAATTTGAGATTGAAAAAATCGGACCTTTCTTTGAAAATCACA
AAGCATTTCCAGAGAGAATTAATACTGAATTCATTCAGGTTGTAGATAAGAATAATCTTAATATGCGTGTGTGGGAGAGA
GGTTCCGGGGAGACACTTGCCTGTGGTACAGGTGCATGTGCGAGCCTTGTTGCAACTGTTCTTAACGGAATGTGCGACAC
AACAGCAACACTTCATCTTCTTGGAGGTGACTTAAAGATTACATGGGATAAAGATGAGAATACCGTATATCTTGAAGGCC
CGGCTAAAACAGTATTTACAGGGGAGGTAGATATTTAA

Upstream 100 bases:

>100_bases
GCAGCATGGACAGTGGCAATACAATGGTAGAGTCAGCAACTATGGTAATGGGAATATATCAGGATGTATAACAAATGTGT
TTCATTACTACATTTATAAT

Downstream 100 bases:

>100_bases
TATGATGACAGATATGACAATGGATAATTTCCTTGCGGTTTTATCTTCAAGTGAGCCGGTGCCGGGTGGCGGCGGAGCAT
GCGGATATGTGGCAGCAGTA

Product: diaminopimelate epimerase

Products: NA

Alternate protein names: DAP epimerase [H]

Number of amino acids: Translated: 305; Mature: 305

Protein sequence:

>305_residues
MKRRPGMKFTKMHGAGNDYIYVDCTQSVIDNPSQVAIDLSDRHFGIGSDGLILIKNSDKADFFMEMYNADGSQGQMCGNG
IRCVGKFVYDNGLTDKTTVTIDTLAGVKILELKTGADGKVETARVNMGAPILEAAQIPVDTKGLKEYKGCEIETIAGKVV
KTPVVDETIVVEGKEYKVTAVSMGNPHAIVYLDKDIDIKKFEIEKIGPFFENHKAFPERINTEFIQVVDKNNLNMRVWER
GSGETLACGTGACASLVATVLNGMCDTTATLHLLGGDLKITWDKDENTVYLEGPAKTVFTGEVDI

Sequences:

>Translated_305_residues
MKRRPGMKFTKMHGAGNDYIYVDCTQSVIDNPSQVAIDLSDRHFGIGSDGLILIKNSDKADFFMEMYNADGSQGQMCGNG
IRCVGKFVYDNGLTDKTTVTIDTLAGVKILELKTGADGKVETARVNMGAPILEAAQIPVDTKGLKEYKGCEIETIAGKVV
KTPVVDETIVVEGKEYKVTAVSMGNPHAIVYLDKDIDIKKFEIEKIGPFFENHKAFPERINTEFIQVVDKNNLNMRVWER
GSGETLACGTGACASLVATVLNGMCDTTATLHLLGGDLKITWDKDENTVYLEGPAKTVFTGEVDI
>Mature_305_residues
MKRRPGMKFTKMHGAGNDYIYVDCTQSVIDNPSQVAIDLSDRHFGIGSDGLILIKNSDKADFFMEMYNADGSQGQMCGNG
IRCVGKFVYDNGLTDKTTVTIDTLAGVKILELKTGADGKVETARVNMGAPILEAAQIPVDTKGLKEYKGCEIETIAGKVV
KTPVVDETIVVEGKEYKVTAVSMGNPHAIVYLDKDIDIKKFEIEKIGPFFENHKAFPERINTEFIQVVDKNNLNMRVWER
GSGETLACGTGACASLVATVLNGMCDTTATLHLLGGDLKITWDKDENTVYLEGPAKTVFTGEVDI

Specific function: Biosynthesis of lysine from aspartate semialdehyde; sixth step. [C]

COG id: COG0253

COG function: function code E; Diaminopimelate epimerase

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the diaminopimelate epimerase family [H]

Homologues:

Organism=Escherichia coli, GI87082334, Length=305, Percent_Identity=36.0655737704918, Blast_Score=196, Evalue=1e-51,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001653
- InterPro:   IPR018510 [H]

Pfam domain/function: PF01678 DAP_epimerase [H]

EC number: =5.1.1.7 [H]

Molecular weight: Translated: 33246; Mature: 33246

Theoretical pI: Translated: 4.88; Mature: 4.88

Prosite motif: PS01326 DAP_EPIMERASE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.3 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
5.6 %Cys+Met (Translated Protein)
2.3 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
5.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKRRPGMKFTKMHGAGNDYIYVDCTQSVIDNPSQVAIDLSDRHFGIGSDGLILIKNSDKA
CCCCCCCEEEEECCCCCCEEEEEECHHHHCCCCEEEEEECCCEECCCCCCEEEEECCCCC
DFFMEMYNADGSQGQMCGNGIRCVGKFVYDNGLTDKTTVTIDTLAGVKILELKTGADGKV
CEEHHHHCCCCCCCCCCCCCCEEEEEEEECCCCCCCEEEEEEECCCEEEEEEECCCCCCE
ETARVNMGAPILEAAQIPVDTKGLKEYKGCEIETIAGKVVKTPVVDETIVVEGKEYKVTA
EEEEEECCCCCHHHHCCCCCCCCHHHHCCCEEEEECCEEEECCCCCCEEEEECCEEEEEE
VSMGNPHAIVYLDKDIDIKKFEIEKIGPFFENHKAFPERINTEFIQVVDKNNLNMRVWER
EECCCCEEEEEECCCCCEEEEEHHHCCCHHHCCCCCHHHCCCEEEEEEECCCCEEEEEEC
GSGETLACGTGACASLVATVLNGMCDTTATLHLLGGDLKITWDKDENTVYLEGPAKTVFT
CCCCEEEECCCHHHHHHHHHHCCCCCCCEEEEEECCEEEEEEECCCCEEEEECCCCEEEE
GEVDI
EEECC
>Mature Secondary Structure
MKRRPGMKFTKMHGAGNDYIYVDCTQSVIDNPSQVAIDLSDRHFGIGSDGLILIKNSDKA
CCCCCCCEEEEECCCCCCEEEEEECHHHHCCCCEEEEEECCCEECCCCCCEEEEECCCCC
DFFMEMYNADGSQGQMCGNGIRCVGKFVYDNGLTDKTTVTIDTLAGVKILELKTGADGKV
CEEHHHHCCCCCCCCCCCCCCEEEEEEEECCCCCCCEEEEEEECCCEEEEEEECCCCCCE
ETARVNMGAPILEAAQIPVDTKGLKEYKGCEIETIAGKVVKTPVVDETIVVEGKEYKVTA
EEEEEECCCCCHHHHCCCCCCCCHHHHCCCEEEEECCEEEECCCCCCEEEEECCEEEEEE
VSMGNPHAIVYLDKDIDIKKFEIEKIGPFFENHKAFPERINTEFIQVVDKNNLNMRVWER
EECCCCEEEEEECCCCCEEEEEHHHCCCHHHCCCCCHHHCCCEEEEEEECCCCEEEEEEC
GSGETLACGTGACASLVATVLNGMCDTTATLHLLGGDLKITWDKDENTVYLEGPAKTVFT
CCCCEEEECCCHHHHHHHHHHCCCCCCCEEEEEECCEEEEEEECCCCEEEEECCCCEEEE
GEVDI
EEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA