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The map label for this gene is comF [H]

Identifier: 238916194

GI number: 238916194

Start: 254455

End: 255186

Strand: Direct

Name: comF [H]

Synonym: EUBELI_00228

Alternate gene names: 238916194

Gene position: 254455-255186 (Clockwise)

Preceding gene: 238916193

Following gene: 238916195

Centisome position: 11.87

GC content: 42.9

Gene sequence:

>732_bases
ATGGATTATAAGAAGGTATTAATGGAGGCAGTTAATGCGGTACTTCCGCCAGCGTGTCCTATGTGTGGAAAGCCGGCACC
TTTTGCTGGGGGCAGCAGGGTTGATATATGCCCGGACTGTATGCGCAAGGTGAGCTATGTCAGTGAGCCGGTCTGTCTTA
AATGTGGCAAACCGGTTGAAAATGATGAAGTGGAATATTGCAGTGATTGCAGCAGGAAAGAACATGTTTATGACCAGGCA
TGCGCTGTGTATGAATATTCTAAGTGCATCAAGGATTCAATATACAGATTCAAGTATCACAATAAAAGGGAATATGCAGG
TATCTATGCAAAACAGATTGCAGACAAGTGTGGCAGCATGATTCATGCCTGGGCGCCAGATGCACTGATTCCTGTGCCTA
TTCACAGTTCAAGACTTAAGGAAAGAGGGTTTAACCAGGCAGAGCTGATTGCAGGAGAATTGGAACAGCTTATTGGTATC
CCTATGGATTGTGAAGCTCTTGTGAGAGTTGTTAAAACAGTTCCTATGAAAGAACTGGATAATGCACATAGGGTTAAAAA
TCTGCAAAATGCTTTTCAAGCAGGAGAAAAAGTTGTAAGATATAGTAAAGTTTTAATTGTGGACGATATATATACAACAG
GAGCAACATTTGATGCATGTGCTGCAGTACTCAAGCATGCTGGCGTTCAGGAAGTGTATGGGGTAAGTTTGTGCATTGGC
GACGGATTCTAG

Upstream 100 bases:

>100_bases
TCACTCACAGACAGGATTGAAGAAATCAGACATATTGAAGATTTTGGACAATGATAATTGATATGTTTATATGTGATAAT
GATGACAATAATGGGGGATT

Downstream 100 bases:

>100_bases
TGCGGATGCGGTTTTGTTTTGCAAAACAATGATGCTTAACAAGGAGGATTTATGGAAGTTAGAAATTGTAAGAATTGTGG
AAGATTATATAATTATATCG

Product: competence protein ComFC

Products: NA

Alternate protein names: DNA transformation protein ComF; Protein COM101A [H]

Number of amino acids: Translated: 243; Mature: 243

Protein sequence:

>243_residues
MDYKKVLMEAVNAVLPPACPMCGKPAPFAGGSRVDICPDCMRKVSYVSEPVCLKCGKPVENDEVEYCSDCSRKEHVYDQA
CAVYEYSKCIKDSIYRFKYHNKREYAGIYAKQIADKCGSMIHAWAPDALIPVPIHSSRLKERGFNQAELIAGELEQLIGI
PMDCEALVRVVKTVPMKELDNAHRVKNLQNAFQAGEKVVRYSKVLIVDDIYTTGATFDACAAVLKHAGVQEVYGVSLCIG
DGF

Sequences:

>Translated_243_residues
MDYKKVLMEAVNAVLPPACPMCGKPAPFAGGSRVDICPDCMRKVSYVSEPVCLKCGKPVENDEVEYCSDCSRKEHVYDQA
CAVYEYSKCIKDSIYRFKYHNKREYAGIYAKQIADKCGSMIHAWAPDALIPVPIHSSRLKERGFNQAELIAGELEQLIGI
PMDCEALVRVVKTVPMKELDNAHRVKNLQNAFQAGEKVVRYSKVLIVDDIYTTGATFDACAAVLKHAGVQEVYGVSLCIG
DGF
>Mature_243_residues
MDYKKVLMEAVNAVLPPACPMCGKPAPFAGGSRVDICPDCMRKVSYVSEPVCLKCGKPVENDEVEYCSDCSRKEHVYDQA
CAVYEYSKCIKDSIYRFKYHNKREYAGIYAKQIADKCGSMIHAWAPDALIPVPIHSSRLKERGFNQAELIAGELEQLIGI
PMDCEALVRVVKTVPMKELDNAHRVKNLQNAFQAGEKVVRYSKVLIVDDIYTTGATFDACAAVLKHAGVQEVYGVSLCIG
DGF

Specific function: Involved in transformation (competence for DNA uptake) [H]

COG id: COG1040

COG function: function code R; Predicted amidophosphoribosyltransferases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ComF/GntX family [H]

Homologues:

Organism=Escherichia coli, GI87082263, Length=231, Percent_Identity=27.2727272727273, Blast_Score=82, Evalue=4e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005222
- InterPro:   IPR000836 [H]

Pfam domain/function: PF00156 Pribosyltran [H]

EC number: NA

Molecular weight: Translated: 26927; Mature: 26927

Theoretical pI: Translated: 7.00; Mature: 7.00

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

5.8 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
8.6 %Cys+Met (Translated Protein)
5.8 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
8.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDYKKVLMEAVNAVLPPACPMCGKPAPFAGGSRVDICPDCMRKVSYVSEPVCLKCGKPVE
CCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCHHEECCCCCC
NDEVEYCSDCSRKEHVYDQACAVYEYSKCIKDSIYRFKYHNKREYAGIYAKQIADKCGSM
CCCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
IHAWAPDALIPVPIHSSRLKERGFNQAELIAGELEQLIGIPMDCEALVRVVKTVPMKELD
HHHCCCCCEEECCCCHHHHHHCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCHHHHH
NAHRVKNLQNAFQAGEKVVRYSKVLIVDDIYTTGATFDACAAVLKHAGVQEVYGVSLCIG
HHHHHHHHHHHHHHHHHHHHHHHHEEEECHHHCCCCHHHHHHHHHHCCHHHHHHEEEEEC
DGF
CCC
>Mature Secondary Structure
MDYKKVLMEAVNAVLPPACPMCGKPAPFAGGSRVDICPDCMRKVSYVSEPVCLKCGKPVE
CCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCHHEECCCCCC
NDEVEYCSDCSRKEHVYDQACAVYEYSKCIKDSIYRFKYHNKREYAGIYAKQIADKCGSM
CCCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
IHAWAPDALIPVPIHSSRLKERGFNQAELIAGELEQLIGIPMDCEALVRVVKTVPMKELD
HHHCCCCCEEECCCCHHHHHHCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCHHHHH
NAHRVKNLQNAFQAGEKVVRYSKVLIVDDIYTTGATFDACAAVLKHAGVQEVYGVSLCIG
HHHHHHHHHHHHHHHHHHHHHHHHEEEECHHHCCCCHHHHHHHHHHCCHHHHHHEEEEEC
DGF
CCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1916268; 1856167; 7542800 [H]