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The map label for this gene is yrrC [H]

Identifier: 238916193

GI number: 238916193

Start: 254088

End: 254408

Strand: Direct

Name: yrrC [H]

Synonym: EUBELI_00227

Alternate gene names: 238916193

Gene position: 254088-254408 (Clockwise)

Preceding gene: 238916192

Following gene: 238916194

Centisome position: 11.85

GC content: 41.74

Gene sequence:

>321_bases
GTGAAATTCGAAGATGGCAGATTCGTTACTTATGAATTCTCTCAGCTTGATGAGCTTGAACTTGCGTATGCGATTACAGT
TCACAAATCACAGGGAAGTGAGTACCCGGCGGTTATTATTCCGATGTCGCAGGGACCAAGAATGCTGATGAACAGGAATA
TTCTGTATACGGCAGTTACAAGAGCAAGAAAATGTGTGTGCCTCGTTGGGGAAGAGGAGATATTCAGGCTTATGGCTGAC
AATGTATCAGAGTCAAAACGATATTCTTCACTCACAGACAGGATTGAAGAAATCAGACATATTGAAGATTTTGGACAATG
A

Upstream 100 bases:

>100_bases
CGAAGCAGATACGGTATTCCAACAGAACAGGGAACGGGCGCATTTAACGGGGATACCGGAGTTATTAGAGAGAATAAGCA
CATTTGATGAGAATGTAACT

Downstream 100 bases:

>100_bases
TAATTGATATGTTTATATGTGATAATGATGACAATAATGGGGGATTATGGATTATAAGAAGGTATTAATGGAGGCAGTTA
ATGCGGTACTTCCGCCAGCG

Product: exodeoxyribonuclease V

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 106; Mature: 106

Protein sequence:

>106_residues
MKFEDGRFVTYEFSQLDELELAYAITVHKSQGSEYPAVIIPMSQGPRMLMNRNILYTAVTRARKCVCLVGEEEIFRLMAD
NVSESKRYSSLTDRIEEIRHIEDFGQ

Sequences:

>Translated_106_residues
MKFEDGRFVTYEFSQLDELELAYAITVHKSQGSEYPAVIIPMSQGPRMLMNRNILYTAVTRARKCVCLVGEEEIFRLMAD
NVSESKRYSSLTDRIEEIRHIEDFGQ
>Mature_106_residues
MKFEDGRFVTYEFSQLDELELAYAITVHKSQGSEYPAVIIPMSQGPRMLMNRNILYTAVTRARKCVCLVGEEEIFRLMAD
NVSESKRYSSLTDRIEEIRHIEDFGQ

Specific function: Exhibits Several Catalytic Activities, Including ATP-Dependent Exonuclease, ATP-Stimulated Endonuclease, ATP-Dependent Unwinding And DNA-Dependent ATPase Activities. Strand Cleavage Occurs 5' To 3' During The Unwinding Of Duplex DNA At Chi Sequences, Whi

COG id: COG0507

COG function: function code L; ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase superfamily I member

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003593
- InterPro:   IPR006345 [H]

Pfam domain/function: NA

EC number: 3.1.11.5

Molecular weight: Translated: 12314; Mature: 12314

Theoretical pI: Translated: 4.92; Mature: 4.92

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
4.7 %Met     (Translated Protein)
6.6 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
4.7 %Met     (Mature Protein)
6.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKFEDGRFVTYEFSQLDELELAYAITVHKSQGSEYPAVIIPMSQGPRMLMNRNILYTAVT
CCCCCCCEEEEECCCCCCEEEEEEEEEECCCCCCCCEEEEECCCCCHHHHCCCCHHEEHH
RARKCVCLVGEEEIFRLMADNVSESKRYSSLTDRIEEIRHIEDFGQ
HHCEEEEEECHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MKFEDGRFVTYEFSQLDELELAYAITVHKSQGSEYPAVIIPMSQGPRMLMNRNILYTAVT
CCCCCCCEEEEECCCCCCEEEEEEEEEECCCCCCCCEEEEECCCCCHHHHCCCCHHEEHH
RARKCVCLVGEEEIFRLMADNVSESKRYSSLTDRIEEIRHIEDFGQ
HHCEEEEEECHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: DNA-dependent ATPase activity; Phosphoric ester hydrolysis [C]

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]