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The map label for this gene is ydhC [H]

Identifier: 238916126

GI number: 238916126

Start: 187943

End: 188611

Strand: Direct

Name: ydhC [H]

Synonym: EUBELI_00160

Alternate gene names: 238916126

Gene position: 187943-188611 (Clockwise)

Preceding gene: 238916125

Following gene: 238916127

Centisome position: 8.77

GC content: 38.71

Gene sequence:

>669_bases
ATGAAAGGTGAACTTAAGATGGATGTTAATGACTATCTCCCATTAAGAGATGTGGTTTTTAATACTTTAAGACAGGCAAT
TCTCCGTGGTGAGATGGAGCCAGGTGAAAGGCTTATGGAAATTCAACTCGCCGATAAGCTTGGAGTGAGCAGAACTCCTA
TAAGAGAGGCAATCAGAAAGCTTGAGCTGGAGGGTCTTGTTATAATGATTCCAAGAAAGGGAGCAGAGGTTGCCCATATA
ACCGAGAAGGACATGAGAGATGTCCTTGAGGTAAGAGCGGCACTTGAGGAGCTTGCAGCAACACTTGCATGCCGCAATGT
TACTCCAGAGCGAATCGAAGAGCTTAAGATGGCAAATAAGAGATTCGAGGCAGCAATTATATCTAAGGATGTGGTTGCAA
TTGTAGATGCTGATGTGAATTTCCATGATATTATATATGCAATGACAGATAATCAGAGACTTATTCAGATCATTAATAAC
TTAAGAGAGCAGATGTACAGATACAGACTGGAATATGTTAAGGATGCAAGAGCACATTCTATTCTTATCAGCGAACATAA
TGACATCATTGATAAGCTTTCTAAGAAAGATGAAGAAAATACTAAGATTGTCATAAGACAGCATATTACTAATCAGGAAA
AGGGTATTATCAGACTTCTTAACAAATAA

Upstream 100 bases:

>100_bases
AAGGGCGAGGCAAGGCAGGTGTATACAACGGAAACATTTACACCATAATATATGTGGAAATAATACACATTCAGAGTAAT
AGAGAAAGGCAAGGTTTTAT

Downstream 100 bases:

>100_bases
TCTTTAGATTACACGGAGGCTGGCTGTATATGCCAGCCTTTGTTAGTTTGTAAATTCCTGTTTATTATGGAAATATATGG
ATATAATCCCAGATATGAAG

Product: Mn-dependent transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 222; Mature: 222

Protein sequence:

>222_residues
MKGELKMDVNDYLPLRDVVFNTLRQAILRGEMEPGERLMEIQLADKLGVSRTPIREAIRKLELEGLVIMIPRKGAEVAHI
TEKDMRDVLEVRAALEELAATLACRNVTPERIEELKMANKRFEAAIISKDVVAIVDADVNFHDIIYAMTDNQRLIQIINN
LREQMYRYRLEYVKDARAHSILISEHNDIIDKLSKKDEENTKIVIRQHITNQEKGIIRLLNK

Sequences:

>Translated_222_residues
MKGELKMDVNDYLPLRDVVFNTLRQAILRGEMEPGERLMEIQLADKLGVSRTPIREAIRKLELEGLVIMIPRKGAEVAHI
TEKDMRDVLEVRAALEELAATLACRNVTPERIEELKMANKRFEAAIISKDVVAIVDADVNFHDIIYAMTDNQRLIQIINN
LREQMYRYRLEYVKDARAHSILISEHNDIIDKLSKKDEENTKIVIRQHITNQEKGIIRLLNK
>Mature_222_residues
MKGELKMDVNDYLPLRDVVFNTLRQAILRGEMEPGERLMEIQLADKLGVSRTPIREAIRKLELEGLVIMIPRKGAEVAHI
TEKDMRDVLEVRAALEELAATLACRNVTPERIEELKMANKRFEAAIISKDVVAIVDADVNFHDIIYAMTDNQRLIQIINN
LREQMYRYRLEYVKDARAHSILISEHNDIIDKLSKKDEENTKIVIRQHITNQEKGIIRLLNK

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1787821, Length=205, Percent_Identity=26.8292682926829, Blast_Score=80, Evalue=1e-16,
Organism=Escherichia coli, GI87081914, Length=207, Percent_Identity=27.0531400966184, Blast_Score=68, Evalue=5e-13,
Organism=Escherichia coli, GI48994961, Length=203, Percent_Identity=28.0788177339901, Blast_Score=64, Evalue=7e-12,
Organism=Escherichia coli, GI87082149, Length=198, Percent_Identity=24.7474747474747, Blast_Score=60, Evalue=9e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011711
- InterPro:   IPR000485
- InterPro:   IPR000524
- InterPro:   IPR011991 [H]

Pfam domain/function: PF07729 FCD; PF00392 GntR [H]

EC number: NA

Molecular weight: Translated: 25709; Mature: 25709

Theoretical pI: Translated: 6.69; Mature: 6.69

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
4.1 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
4.1 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKGELKMDVNDYLPLRDVVFNTLRQAILRGEMEPGERLMEIQLADKLGVSRTPIREAIRK
CCCCEECCHHHCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHH
LELEGLVIMIPRKGAEVAHITEKDMRDVLEVRAALEELAATLACRNVTPERIEELKMANK
HHHCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
RFEAAIISKDVVAIVDADVNFHDIIYAMTDNQRLIQIINNLREQMYRYRLEYVKDARAHS
HHHHHHHCCCEEEEEECCCCHHHEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHE
ILISEHNDIIDKLSKKDEENTKIVIRQHITNQEKGIIRLLNK
EEEECCHHHHHHHHCCCCCCCEEEEEHHHCCCCCHHHHHCCC
>Mature Secondary Structure
MKGELKMDVNDYLPLRDVVFNTLRQAILRGEMEPGERLMEIQLADKLGVSRTPIREAIRK
CCCCEECCHHHCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHH
LELEGLVIMIPRKGAEVAHITEKDMRDVLEVRAALEELAATLACRNVTPERIEELKMANK
HHHCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
RFEAAIISKDVVAIVDADVNFHDIIYAMTDNQRLIQIINNLREQMYRYRLEYVKDARAHS
HHHHHHHCCCEEEEEECCCCHHHEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHE
ILISEHNDIIDKLSKKDEENTKIVIRQHITNQEKGIIRLLNK
EEEECCHHHHHHHHCCCCCCCEEEEEHHHCCCCCHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9202461; 9384377 [H]