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The map label for this gene is yidZ [H]

Identifier: 238897220

GI number: 238897220

Start: 5220431

End: 5221390

Strand: Direct

Name: yidZ [H]

Synonym: KP1_5491

Alternate gene names: 238897220

Gene position: 5220431-5221390 (Clockwise)

Preceding gene: 238897219

Following gene: 238897221

Centisome position: 99.46

GC content: 59.17

Gene sequence:

>960_bases
ATGAAGAAGCCGCTGTCGAGTCTTGATCTTAATTTACTCCTCTGCCTGCAGCTCCTGACCCAGGAGCTCAGCGTTACCCG
TACGGCGAAGCGGATGAACGTTTCGCCGTCAGCGGTGAGCAAGTCGCTGGCCAAACTGCGCGCCTGGTTTGACGATCCGC
TGTTTGTGAAAACCCCGCTGGGCCTGGCGCCCACGCCGCTGGTCAGCAGCATGGAGCAGGATCTGGCGGACTGGATGCAG
ATGGGCAACCAAATCCTCGATAAACCGCACCATACCATGCCCAGCGGCCTCAAATTCGAACTGGCGGCGGAAGCGCCGCT
GCTGATGATCCTGTTTAACACCCTCTCTCAGCGCATCTATCAGCGCTATCCGCAGGCATTGATTCGTTTGCGCAACTGGG
ACTACGACTCCCTGGACGCCATCATCCGCGGTGAGGTGGATATCGGCTTCTGCGGACGCGAAAGCCATCCGCAGTCGCGT
GAGCTGCTGAGCCTTCTGCCGTGGTATATCGATTTTGATGTGCTGTTCACCGACCTGCCGCAGGTCTGGCTGCGCGCCGA
TCATCCGGCGCTCAGGGAAGAGTGGGATCTGGCGGCATTCTTACGCTATCCGCATATCACTATCTGCTGGGAACAACGCG
ATACCTGGGCCCTGGACGACGTGCTGCAGGAGCTGGGGTATAAGCGTAACGTGGCGCTGACCGTGCCGGGGTTTGAGCAA
TCACTTTTTATGGCCGCTCAGCCGCAGCACACCATGCTGGCCACCGCGCCGCGCTACTGTCAGCACTATAATCAGCAGCA
CCAGCTGCCGCTCGTCTCCCGGCCGCTCCCCCTGGAGGCGCAGCATCTGGAAAAGCTGCGCGTTCCCTTCACCCTGCTAT
GGCATAAGCGCAACAGCTACAACCCGAAGCTTGTCTGGCTTAGAGATACGCTGAAAGCGCTCTATTCCGGTACGCTTTAA

Upstream 100 bases:

>100_bases
CTCAGCGCAATGAATATGCTGATCGGGATACTCATTGCCTGTAGCATAGTGAGCCTTGTTTTGTTACTGGTCGTTACCCC
GCCGCGGGTTGCGCAATACG

Downstream 100 bases:

>100_bases
GCCTTGTTTCGTGCCCATAGCACCTTATTTGCGCAAGAATTTGTAAAATTCAAACAAATTCTCTTTTCAATGGGGGATTT
CGGCATTAAAACCTGTTAAT

Product: DNA-binding transcriptional regulator YidZ

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 319; Mature: 319

Protein sequence:

>319_residues
MKKPLSSLDLNLLLCLQLLTQELSVTRTAKRMNVSPSAVSKSLAKLRAWFDDPLFVKTPLGLAPTPLVSSMEQDLADWMQ
MGNQILDKPHHTMPSGLKFELAAEAPLLMILFNTLSQRIYQRYPQALIRLRNWDYDSLDAIIRGEVDIGFCGRESHPQSR
ELLSLLPWYIDFDVLFTDLPQVWLRADHPALREEWDLAAFLRYPHITICWEQRDTWALDDVLQELGYKRNVALTVPGFEQ
SLFMAAQPQHTMLATAPRYCQHYNQQHQLPLVSRPLPLEAQHLEKLRVPFTLLWHKRNSYNPKLVWLRDTLKALYSGTL

Sequences:

>Translated_319_residues
MKKPLSSLDLNLLLCLQLLTQELSVTRTAKRMNVSPSAVSKSLAKLRAWFDDPLFVKTPLGLAPTPLVSSMEQDLADWMQ
MGNQILDKPHHTMPSGLKFELAAEAPLLMILFNTLSQRIYQRYPQALIRLRNWDYDSLDAIIRGEVDIGFCGRESHPQSR
ELLSLLPWYIDFDVLFTDLPQVWLRADHPALREEWDLAAFLRYPHITICWEQRDTWALDDVLQELGYKRNVALTVPGFEQ
SLFMAAQPQHTMLATAPRYCQHYNQQHQLPLVSRPLPLEAQHLEKLRVPFTLLWHKRNSYNPKLVWLRDTLKALYSGTL
>Mature_319_residues
MKKPLSSLDLNLLLCLQLLTQELSVTRTAKRMNVSPSAVSKSLAKLRAWFDDPLFVKTPLGLAPTPLVSSMEQDLADWMQ
MGNQILDKPHHTMPSGLKFELAAEAPLLMILFNTLSQRIYQRYPQALIRLRNWDYDSLDAIIRGEVDIGFCGRESHPQSR
ELLSLLPWYIDFDVLFTDLPQVWLRADHPALREEWDLAAFLRYPHITICWEQRDTWALDDVLQELGYKRNVALTVPGFEQ
SLFMAAQPQHTMLATAPRYCQHYNQQHQLPLVSRPLPLEAQHLEKLRVPFTLLWHKRNSYNPKLVWLRDTLKALYSGTL

Specific function: Involved in anaerobic NO protection [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1790147, Length=317, Percent_Identity=73.5015772870662, Blast_Score=472, Evalue=1e-134,
Organism=Escherichia coli, GI1786820, Length=61, Percent_Identity=47.5409836065574, Blast_Score=68, Evalue=1e-12,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 36980; Mature: 36980

Theoretical pI: Translated: 7.66; Mature: 7.66

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKPLSSLDLNLLLCLQLLTQELSVTRTAKRMNVSPSAVSKSLAKLRAWFDDPLFVKTPL
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCEEECCC
GLAPTPLVSSMEQDLADWMQMGNQILDKPHHTMPSGLKFELAAEAPLLMILFNTLSQRIY
CCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHH
QRYPQALIRLRNWDYDSLDAIIRGEVDIGFCGRESHPQSRELLSLLPWYIDFDVLFTDLP
HHHHHHHHHHCCCCCHHHHHHEECCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
QVWLRADHPALREEWDLAAFLRYPHITICWEQRDTWALDDVLQELGYKRNVALTVPGFEQ
HHHHCCCCCHHHHHHHHHHHHHCCEEEEEECCCCCHHHHHHHHHCCCCCCEEEEECCCCH
SLFMAAQPQHTMLATAPRYCQHYNQQHQLPLVSRPLPLEAQHLEKLRVPFTLLWHKRNSY
HHHEECCCCCHHHHCCHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHCCCEEEEEECCCCC
NPKLVWLRDTLKALYSGTL
CCEEEEHHHHHHHHHCCCC
>Mature Secondary Structure
MKKPLSSLDLNLLLCLQLLTQELSVTRTAKRMNVSPSAVSKSLAKLRAWFDDPLFVKTPL
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCEEECCC
GLAPTPLVSSMEQDLADWMQMGNQILDKPHHTMPSGLKFELAAEAPLLMILFNTLSQRIY
CCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHH
QRYPQALIRLRNWDYDSLDAIIRGEVDIGFCGRESHPQSRELLSLLPWYIDFDVLFTDLP
HHHHHHHHHHCCCCCHHHHHHEECCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
QVWLRADHPALREEWDLAAFLRYPHITICWEQRDTWALDDVLQELGYKRNVALTVPGFEQ
HHHHCCCCCHHHHHHHHHHHHHCCEEEEEECCCCCHHHHHHHHHCCCCCCEEEEECCCCH
SLFMAAQPQHTMLATAPRYCQHYNQQHQLPLVSRPLPLEAQHLEKLRVPFTLLWHKRNSY
HHHEECCCCCHHHHCCHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHCCCEEEEEECCCCC
NPKLVWLRDTLKALYSGTL
CCEEEEHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA