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The map label for this gene is yicJ [H]

Identifier: 238897121

GI number: 238897121

Start: 5120245

End: 5121639

Strand: Reverse

Name: yicJ [H]

Synonym: KP1_5379

Alternate gene names: 238897121

Gene position: 5121639-5120245 (Counterclockwise)

Preceding gene: 238897124

Following gene: 238897120

Centisome position: 97.58

GC content: 59.14

Gene sequence:

>1395_bases
ATGAAAGATCACATTTTGTCCGTCAAAGAGAAAATTGGTTACGGCATGGGTGATGCCGCCAGCCACATTATTTTTGATAA
CGTCATGTTGTATATGATGTTTTTCTACACTGATATTTTTGGTATCCCCGCCGGCTTTGTCGGCACCATGTTCCTGCTGG
CGCGCGCGCTGGACGCGATTTCCGACCCGTGTATGGGTCTGCTTGCCGACCGTACCCGCAGCCGCTGGGGTAAGTTCCGC
CCATGGATCCTCTTTGGCGCTATCCCGTTCGGCCTCGTCTGCGTGCTGGCCTACAGCTCGCCGGATTTAAGCCACAACGG
CAAGCTGATCTACGCCGCCGTGACCTACACGCTGCTGACCCTGCTCTACACCGTGGTGAATATCCCTTACTGCGCGCTGG
GCGGCGTGATCACCGACAACCCGACGCAGCGCATTTCGCTGCAGTCCTGGCGCTTCGTGCTGGCGACGGCGGGGGGCATG
CTCTCTACCGTGCTGATGATGCCGCTGGTCAACTTTATCGGCGGCGAAGACAAAGCGCTCGGCTTCCAGGGGGGCATCGC
GGTGCTGTCGGTGATTGCCTTCCTGATGCTGGCCTTCTGCTTCTTTACCACCAAAGAGCGTGTCGAAGCGCCGCCGAGCA
GTACCTCGATGCGTGAAGACCTGCGCGATATCTGGCGCAATGACCAGTGGCGGGTGGTCGGCGTGCTCACCATCCTCAAT
ATCCTCGCGGTCTGCGTTCGCGGCGGCGCGATGATGTATTACACCACCTGGATCATGGGCTCGGCGGCGCTGTTCACCGC
CTTCCTCACGACCTACTGCGTCGGCAACCTGATTGGCTCGGCGCTGGCGAAACCGCTGACCGACTGGAAATGCAAAGTCA
GCGTCTTCTGGTGGACCAACGCCCTCCTGGCGGTGCTCAGCGTGGCGATGTTCTTCGTACCGATGGACGCCGAAATCACC
ATGTTTGTCTTTATCTTCGTCATTGGCGTACTGCACCAGCTGGTGACGCCAATCCAGTGGGTAATGATGTCCGACACCGT
CGACTACGGCGAATGGTGTAACGGCAAACGCCTGACCGGCATCAGCTTCGCCGGTACCCTGTTTGTGCTCAAGTTAGGGC
TGGCGCTGGGCGGCGCGCTGATCGGCTGGATGCTGGCCGGCGGCGGCTATGACGCCGCCGCTAAAACCCAGAACAGCGCC
ACCCTCACCATCATTATCGCCTTGTTCACCCTCGTTCCGGCGGTGTGCTACCTGCTGAGCGCGGTGATCGCCAAACGCTA
CTACACGCTGAAAACGCCGTTCCTGAAAAAAATGATGGCCGAGCTGGCCGAGGGCGCGCGTCGCAACGAACAAGAATTCA
CCGCCGCCCCGATCGACAAAGAATGGCAAAACTAA

Upstream 100 bases:

>100_bases
ATCTGATAACGAGATATCGCAATTCATCTTAGTGCGGCAAAGGTTTACAAAAACCGTAACCGGTACCAACCCTCGGTGCC
GCTAAGGGAATAGTGCGCAT

Downstream 100 bases:

>100_bases
GAGGACGTTTTAATGAAAATCAGTGATGGAAACTGGCTCATTCAACCAGGGCTCAACCTGATCCAACCCGTACAGGTTTA
CGAGGTGGAGCAGCAGGGGA

Product: putative transporter

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 464; Mature: 464

Protein sequence:

>464_residues
MKDHILSVKEKIGYGMGDAASHIIFDNVMLYMMFFYTDIFGIPAGFVGTMFLLARALDAISDPCMGLLADRTRSRWGKFR
PWILFGAIPFGLVCVLAYSSPDLSHNGKLIYAAVTYTLLTLLYTVVNIPYCALGGVITDNPTQRISLQSWRFVLATAGGM
LSTVLMMPLVNFIGGEDKALGFQGGIAVLSVIAFLMLAFCFFTTKERVEAPPSSTSMREDLRDIWRNDQWRVVGVLTILN
ILAVCVRGGAMMYYTTWIMGSAALFTAFLTTYCVGNLIGSALAKPLTDWKCKVSVFWWTNALLAVLSVAMFFVPMDAEIT
MFVFIFVIGVLHQLVTPIQWVMMSDTVDYGEWCNGKRLTGISFAGTLFVLKLGLALGGALIGWMLAGGGYDAAAKTQNSA
TLTIIIALFTLVPAVCYLLSAVIAKRYYTLKTPFLKKMMAELAEGARRNEQEFTAAPIDKEWQN

Sequences:

>Translated_464_residues
MKDHILSVKEKIGYGMGDAASHIIFDNVMLYMMFFYTDIFGIPAGFVGTMFLLARALDAISDPCMGLLADRTRSRWGKFR
PWILFGAIPFGLVCVLAYSSPDLSHNGKLIYAAVTYTLLTLLYTVVNIPYCALGGVITDNPTQRISLQSWRFVLATAGGM
LSTVLMMPLVNFIGGEDKALGFQGGIAVLSVIAFLMLAFCFFTTKERVEAPPSSTSMREDLRDIWRNDQWRVVGVLTILN
ILAVCVRGGAMMYYTTWIMGSAALFTAFLTTYCVGNLIGSALAKPLTDWKCKVSVFWWTNALLAVLSVAMFFVPMDAEIT
MFVFIFVIGVLHQLVTPIQWVMMSDTVDYGEWCNGKRLTGISFAGTLFVLKLGLALGGALIGWMLAGGGYDAAAKTQNSA
TLTIIIALFTLVPAVCYLLSAVIAKRYYTLKTPFLKKMMAELAEGARRNEQEFTAAPIDKEWQN
>Mature_464_residues
MKDHILSVKEKIGYGMGDAASHIIFDNVMLYMMFFYTDIFGIPAGFVGTMFLLARALDAISDPCMGLLADRTRSRWGKFR
PWILFGAIPFGLVCVLAYSSPDLSHNGKLIYAAVTYTLLTLLYTVVNIPYCALGGVITDNPTQRISLQSWRFVLATAGGM
LSTVLMMPLVNFIGGEDKALGFQGGIAVLSVIAFLMLAFCFFTTKERVEAPPSSTSMREDLRDIWRNDQWRVVGVLTILN
ILAVCVRGGAMMYYTTWIMGSAALFTAFLTTYCVGNLIGSALAKPLTDWKCKVSVFWWTNALLAVLSVAMFFVPMDAEIT
MFVFIFVIGVLHQLVTPIQWVMMSDTVDYGEWCNGKRLTGISFAGTLFVLKLGLALGGALIGWMLAGGGYDAAAKTQNSA
TLTIIIALFTLVPAVCYLLSAVIAKRYYTLKTPFLKKMMAELAEGARRNEQEFTAAPIDKEWQN

Specific function: Unknown

COG id: COG2211

COG function: function code G; Na+/melibiose symporter and related transporters

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sodium:galactoside symporter (TC 2.A.2) family [H]

Homologues:

Organism=Escherichia coli, GI87082306, Length=460, Percent_Identity=85.6521739130435, Blast_Score=810, Evalue=0.0,
Organism=Escherichia coli, GI1786466, Length=414, Percent_Identity=44.4444444444444, Blast_Score=361, Evalue=1e-101,
Organism=Escherichia coli, GI1790561, Length=461, Percent_Identity=28.6334056399132, Blast_Score=196, Evalue=3e-51,
Organism=Escherichia coli, GI145693206, Length=449, Percent_Identity=27.6169265033408, Blast_Score=179, Evalue=3e-46,
Organism=Escherichia coli, GI48994989, Length=466, Percent_Identity=30.0429184549356, Blast_Score=174, Evalue=7e-45,
Organism=Escherichia coli, GI1787902, Length=455, Percent_Identity=28.5714285714286, Blast_Score=168, Evalue=6e-43,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR016196
- InterPro:   IPR001927
- InterPro:   IPR018043 [H]

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 51147; Mature: 51147

Theoretical pI: Translated: 8.29; Mature: 8.29

Prosite motif: PS00872 NA_GALACTOSIDE_SYMP

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
5.0 %Met     (Translated Protein)
6.9 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
5.0 %Met     (Mature Protein)
6.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKDHILSVKEKIGYGMGDAASHIIFDNVMLYMMFFYTDIFGIPAGFVGTMFLLARALDAI
CCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
SDPCMGLLADRTRSRWGKFRPWILFGAIPFGLVCVLAYSSPDLSHNGKLIYAAVTYTLLT
CCHHHHHHHHHHHHHCCCCCCCCEEHHHHHHHHHHHHCCCCCCCCCCCEEHHHHHHHHHH
LLYTVVNIPYCALGGVITDNPTQRISLQSWRFVLATAGGMLSTVLMMPLVNFIGGEDKAL
HHHHHHCCCHHHHCCCCCCCCCCCEEHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCC
GFQGGIAVLSVIAFLMLAFCFFTTKERVEAPPSSTSMREDLRDIWRNDQWRVVGVLTILN
CCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCEEEHHHHHHHH
ILAVCVRGGAMMYYTTWIMGSAALFTAFLTTYCVGNLIGSALAKPLTDWKCKVSVFWWTN
HHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEHHHH
ALLAVLSVAMFFVPMDAEITMFVFIFVIGVLHQLVTPIQWVMMSDTVDYGEWCNGKRLTG
HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHCCCCCEECC
ISFAGTLFVLKLGLALGGALIGWMLAGGGYDAAAKTQNSATLTIIIALFTLVPAVCYLLS
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
AVIAKRYYTLKTPFLKKMMAELAEGARRNEQEFTAAPIDKEWQN
HHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MKDHILSVKEKIGYGMGDAASHIIFDNVMLYMMFFYTDIFGIPAGFVGTMFLLARALDAI
CCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
SDPCMGLLADRTRSRWGKFRPWILFGAIPFGLVCVLAYSSPDLSHNGKLIYAAVTYTLLT
CCHHHHHHHHHHHHHCCCCCCCCEEHHHHHHHHHHHHCCCCCCCCCCCEEHHHHHHHHHH
LLYTVVNIPYCALGGVITDNPTQRISLQSWRFVLATAGGMLSTVLMMPLVNFIGGEDKAL
HHHHHHCCCHHHHCCCCCCCCCCCEEHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCC
GFQGGIAVLSVIAFLMLAFCFFTTKERVEAPPSSTSMREDLRDIWRNDQWRVVGVLTILN
CCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCEEEHHHHHHHH
ILAVCVRGGAMMYYTTWIMGSAALFTAFLTTYCVGNLIGSALAKPLTDWKCKVSVFWWTN
HHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEHHHH
ALLAVLSVAMFFVPMDAEITMFVFIFVIGVLHQLVTPIQWVMMSDTVDYGEWCNGKRLTG
HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHCCCCCEECC
ISFAGTLFVLKLGLALGGALIGWMLAGGGYDAAAKTQNSATLTIIIALFTLVPAVCYLLS
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
AVIAKRYYTLKTPFLKKMMAELAEGARRNEQEFTAAPIDKEWQN
HHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 7686882; 9278503 [H]