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The map label for this gene is rpiR [C]

Identifier: 238897119

GI number: 238897119

Start: 5117036

End: 5117758

Strand: Reverse

Name: rpiR [C]

Synonym: KP1_5377

Alternate gene names: 238897119

Gene position: 5117758-5117036 (Counterclockwise)

Preceding gene: 238897120

Following gene: 238897114

Centisome position: 97.51

GC content: 53.39

Gene sequence:

>723_bases
ATGGACGTAGAAAATATCTTTCGTGACGTGAAGCTAAGCAAAACGGAAATGACCGTGCTGCGCTTTATTCAGAACGACCC
GGAGCAGTGTATCCGCCAGGGAGTTCGCGCTGTGGCCGAACAGTGCTACAGCAACCCCTCTTCCCTGGTCCGGCTGGCAA
AGAAACTGAAGTTCAGCGGCTGGCTGGAGCTGGTCTATTTCATCAAGTTCAATATCACCATGCCGAAGCTCGATGTCACC
AACGATATCGACTACATGAGCGTTCAGCCGGAAGAAGCGCTGACGCCGCTGCTGGCAAGCCTTAAACAGCAGCGCATCCT
GATCCACGGCAGCGGCTTTTCGCAGCTAATCGCCCAGTATATTTACAACAAGTTCCTCGTCACCGGCGTGAATGCCAGCC
TGGCGCTGTGGCCGGATTATGAAATCCTCGAACAGAAAAACGCCGCCCGCTTCGACTCCATCTGGATCGTTTCTAAATCC
GGGCGCAGCAGCTCGGCGCTTAACTGGGTGAAGGCCCTGGAGGGGAAGGAGATTAATCTGGTCTGCTTTACCGGCGACTA
CCAAAGCCCGCTGGCGCAGGCCGCGGATACGGCGTTTATTATTCACGACCCGCAGAAGTTCGATGATGATATTTACTGGA
GCAACCCGTTTTTCGGCTACTGCATCTTAGGCTTTGAGCGACTATTGAAGATGTGGTTTACCAGTCTACGCAGCAATAGT
TAG

Upstream 100 bases:

>100_bases
TTTTGTACAAAAAGTAACGTTCATTTCATTGTGGTGACTCAGGCCGCAGACGCGGTTGTCGAACGGTGTTAGCGTATTCT
GCCGCTGAGAGGAGCCCGCC

Downstream 100 bases:

>100_bases
CCCCCGCTAAGCGCGGTGCGAGCGGGGGGAGTTCCCGGATGGCGGCTGGCGCCTTATCCGGGCTACCGGGTGATACGGCT
ATTTTGCCGGGTGGCGGCTT

Product: putative sugar isomerase

Products: NA

Alternate protein names: RpiR Family Transcriptional Regulator; Transcriptional Regulator RpiR Family; Sugar Isomerase; SIS Domain Protein; SIS Domain-Containing Protein

Number of amino acids: Translated: 240; Mature: 240

Protein sequence:

>240_residues
MDVENIFRDVKLSKTEMTVLRFIQNDPEQCIRQGVRAVAEQCYSNPSSLVRLAKKLKFSGWLELVYFIKFNITMPKLDVT
NDIDYMSVQPEEALTPLLASLKQQRILIHGSGFSQLIAQYIYNKFLVTGVNASLALWPDYEILEQKNAARFDSIWIVSKS
GRSSSALNWVKALEGKEINLVCFTGDYQSPLAQAADTAFIIHDPQKFDDDIYWSNPFFGYCILGFERLLKMWFTSLRSNS

Sequences:

>Translated_240_residues
MDVENIFRDVKLSKTEMTVLRFIQNDPEQCIRQGVRAVAEQCYSNPSSLVRLAKKLKFSGWLELVYFIKFNITMPKLDVT
NDIDYMSVQPEEALTPLLASLKQQRILIHGSGFSQLIAQYIYNKFLVTGVNASLALWPDYEILEQKNAARFDSIWIVSKS
GRSSSALNWVKALEGKEINLVCFTGDYQSPLAQAADTAFIIHDPQKFDDDIYWSNPFFGYCILGFERLLKMWFTSLRSNS
>Mature_240_residues
MDVENIFRDVKLSKTEMTVLRFIQNDPEQCIRQGVRAVAEQCYSNPSSLVRLAKKLKFSGWLELVYFIKFNITMPKLDVT
NDIDYMSVQPEEALTPLLASLKQQRILIHGSGFSQLIAQYIYNKFLVTGVNASLALWPDYEILEQKNAARFDSIWIVSKS
GRSSSALNWVKALEGKEINLVCFTGDYQSPLAQAADTAFIIHDPQKFDDDIYWSNPFFGYCILGFERLLKMWFTSLRSNS

Specific function: Regulatory Protein Involved In Rpib Gene Repression. Also Involved In Als Operon Repression. [C]

COG id: COG1737

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 27522; Mature: 27522

Theoretical pI: Translated: 6.52; Mature: 6.52

Prosite motif: PS51071 HTH_RPIR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDVENIFRDVKLSKTEMTVLRFIQNDPEQCIRQGVRAVAEQCYSNPSSLVRLAKKLKFSG
CCHHHHHHHHHCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
WLELVYFIKFNITMPKLDVTNDIDYMSVQPEEALTPLLASLKQQRILIHGSGFSQLIAQY
HHHHHEEHEEECCCCCCCCCCCCCCEECCCHHHHHHHHHHHHHCEEEEECCCHHHHHHHH
IYNKFLVTGVNASLALWPDYEILEQKNAARFDSIWIVSKSGRSSSALNWVKALEGKEINL
HHHHHHEECCCCEEEECCCHHHHHCCCCCCCCEEEEEECCCCCHHHHHHHHHHCCCEEEE
VCFTGDYQSPLAQAADTAFIIHDPQKFDDDIYWSNPFFGYCILGFERLLKMWFTSLRSNS
EEEECCCCCHHHHHCCCEEEEECCCCCCCCCEECCCCHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MDVENIFRDVKLSKTEMTVLRFIQNDPEQCIRQGVRAVAEQCYSNPSSLVRLAKKLKFSG
CCHHHHHHHHHCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
WLELVYFIKFNITMPKLDVTNDIDYMSVQPEEALTPLLASLKQQRILIHGSGFSQLIAQY
HHHHHEEHEEECCCCCCCCCCCCCCEECCCHHHHHHHHHHHHHCEEEEECCCHHHHHHHH
IYNKFLVTGVNASLALWPDYEILEQKNAARFDSIWIVSKSGRSSSALNWVKALEGKEINL
HHHHHHEECCCCEEEECCCHHHHHCCCCCCCCEEEEEECCCCCHHHHHHHHHHCCCEEEE
VCFTGDYQSPLAQAADTAFIIHDPQKFDDDIYWSNPFFGYCILGFERLLKMWFTSLRSNS
EEEECCCCCHHHHHCCCEEEEECCCCCCCCCEECCCCHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA