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The map label for this gene is yibD [H]

Identifier: 238897072

GI number: 238897072

Start: 5068672

End: 5069661

Strand: Direct

Name: yibD [H]

Synonym: KP1_5323

Alternate gene names: 238897072

Gene position: 5068672-5069661 (Clockwise)

Preceding gene: 238897071

Following gene: 238897073

Centisome position: 96.57

GC content: 54.95

Gene sequence:

>990_bases
ATGAGTCAAACGCCTTTATTGAGCATCGTGGCTGCCGTCTACAACGGTGAGAAATTTCTAGCGCAATTCTTTGAGTGCAT
TGAACAGCAGCAGCTGGACAGCTATGAACTGATCCTGGTGAACGATGGTTCGACAGACAACAGCCTGGCGGTGATCGCCG
AATGGCAGGAGCGGCTGCAGAACGTCCAGGTGCTGGAGCAGGAAAACCAGGGCGTCTCGGTCGCGCGCAATACCGGCCTC
GCCGCCGCCAGCGGCAAATATCTCGCGTTTCCGGATATCGACGACAAACTCTATCCGGGCATGTATCGCACGCTGCTGGA
GATGGCCGAGAAAGAACATCTCGATATCGCTACCTGCAACGGCACCTATGTGTACGAAAAGCGCCGCGAGAGCCACCCGA
TCTTCCCACTGGATCGCCTGCCCTCGACGGGTGTGCTGCCGGGCCATGTCTGGCTTAAGCAGGCCCTGGACTCGCGGAAG
TTTCTGCACGTCACCTGGCTTAATATTTATCGTCACGACTTTATCCGCCAGCATCACTTCCATTTCGAGCCTGGCCTGCG
CCATCAGGATATCCCATGGACCACAGAAGCCCTGCTGGCCGCGGAGCGCGTGCAATACACCAGTCAGCAGTTCTATGATT
ACTACATTCACTCTGAGTCGGTGTCGCATAAGCCGGACAACGACGACACGCTGATGCGTTCGGCGCGCCACTATATGAAG
ATTCTGGAGATGCTGGAGGCGATTAACCAGCGCTACCCGGATAAAGTACGCCATATCGCCGCCTGTCGCTGGCAGATTGC
CAAAGAAGGCCTGGGGATCATCCATACCTTCGATAGCATGAAAGATGAGTCCAAAAAGCATGTTATTATTAACGAATTCT
TCGACCGCGGTATCTGGCGGTTAATCTGGAAAAACGCCTGTACTTTCCGTTTACGCTGGCGCCTGGGACGCCGTTATCTG
CGTATTAAGCGTTATCGCCACGCGGGATAG

Upstream 100 bases:

>100_bases
ACGATGCCGCGCTGGAAAAATTCAGCGTCGTATCCATTTGTCAGCAGTACCGTCAGCTGCAGCGCACCTGACGCCGTTAG
TTAACCAGGATCGAAGATTT

Downstream 100 bases:

>100_bases
ACCAAAAACCCGCTGTTTCCGCCAAAGAGATAGCTTTACGCGGGCTAAATGCTTAGAATTTGCCCGCCAAAACAGAGAAC
GGATAAATAGTTTGGAATTG

Product: putative glycosyl transferase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 329; Mature: 328

Protein sequence:

>329_residues
MSQTPLLSIVAAVYNGEKFLAQFFECIEQQQLDSYELILVNDGSTDNSLAVIAEWQERLQNVQVLEQENQGVSVARNTGL
AAASGKYLAFPDIDDKLYPGMYRTLLEMAEKEHLDIATCNGTYVYEKRRESHPIFPLDRLPSTGVLPGHVWLKQALDSRK
FLHVTWLNIYRHDFIRQHHFHFEPGLRHQDIPWTTEALLAAERVQYTSQQFYDYYIHSESVSHKPDNDDTLMRSARHYMK
ILEMLEAINQRYPDKVRHIAACRWQIAKEGLGIIHTFDSMKDESKKHVIINEFFDRGIWRLIWKNACTFRLRWRLGRRYL
RIKRYRHAG

Sequences:

>Translated_329_residues
MSQTPLLSIVAAVYNGEKFLAQFFECIEQQQLDSYELILVNDGSTDNSLAVIAEWQERLQNVQVLEQENQGVSVARNTGL
AAASGKYLAFPDIDDKLYPGMYRTLLEMAEKEHLDIATCNGTYVYEKRRESHPIFPLDRLPSTGVLPGHVWLKQALDSRK
FLHVTWLNIYRHDFIRQHHFHFEPGLRHQDIPWTTEALLAAERVQYTSQQFYDYYIHSESVSHKPDNDDTLMRSARHYMK
ILEMLEAINQRYPDKVRHIAACRWQIAKEGLGIIHTFDSMKDESKKHVIINEFFDRGIWRLIWKNACTFRLRWRLGRRYL
RIKRYRHAG
>Mature_328_residues
SQTPLLSIVAAVYNGEKFLAQFFECIEQQQLDSYELILVNDGSTDNSLAVIAEWQERLQNVQVLEQENQGVSVARNTGLA
AASGKYLAFPDIDDKLYPGMYRTLLEMAEKEHLDIATCNGTYVYEKRRESHPIFPLDRLPSTGVLPGHVWLKQALDSRKF
LHVTWLNIYRHDFIRQHHFHFEPGLRHQDIPWTTEALLAAERVQYTSQQFYDYYIHSESVSHKPDNDDTLMRSARHYMKI
LEMLEAINQRYPDKVRHIAACRWQIAKEGLGIIHTFDSMKDESKKHVIINEFFDRGIWRLIWKNACTFRLRWRLGRRYLR
IKRYRHAG

Specific function: Unknown

COG id: COG0463

COG function: function code M; Glycosyltransferases involved in cell wall biogenesis

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the glycosyltransferase 2 family [H]

Homologues:

Organism=Escherichia coli, GI1790044, Length=311, Percent_Identity=38.5852090032154, Blast_Score=237, Evalue=7e-64,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001173 [H]

Pfam domain/function: PF00535 Glycos_transf_2 [H]

EC number: 2.-.-.- [C]

Molecular weight: Translated: 38784; Mature: 38652

Theoretical pI: Translated: 8.05; Mature: 8.05

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSQTPLLSIVAAVYNGEKFLAQFFECIEQQQLDSYELILVNDGSTDNSLAVIAEWQERLQ
CCCCHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCEEEHHHHHHHHH
NVQVLEQENQGVSVARNTGLAAASGKYLAFPDIDDKLYPGMYRTLLEMAEKEHLDIATCN
HHHHHHHCCCCCEEECCCCCEECCCCEEECCCCCCCCCCHHHHHHHHHHHHCCCEEEECC
GTYVYEKRRESHPIFPLDRLPSTGVLPGHVWLKQALDSRKFLHVTWLNIYRHDFIRQHHF
CEEEEECCCCCCCCCCHHCCCCCCCCCHHHHHHHHHCCCCEEEEHHHHHHHHHHHHHHCC
HFEPGLRHQDIPWTTEALLAAERVQYTSQQFYDYYIHSESVSHKPDNDDTLMRSARHYMK
CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHEEECCCCCCCCCCHHHHHHHHHHHHH
ILEMLEAINQRYPDKVRHIAACRWQIAKEGLGIIHTFDSMKDESKKHVIINEFFDRGIWR
HHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCEEEEHHHHCCCCCCEEEHHHHHHHHHHH
LIWKNACTFRLRWRLGRRYLRIKRYRHAG
HHHHCCCEEEHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
SQTPLLSIVAAVYNGEKFLAQFFECIEQQQLDSYELILVNDGSTDNSLAVIAEWQERLQ
CCCHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCEEEHHHHHHHHH
NVQVLEQENQGVSVARNTGLAAASGKYLAFPDIDDKLYPGMYRTLLEMAEKEHLDIATCN
HHHHHHHCCCCCEEECCCCCEECCCCEEECCCCCCCCCCHHHHHHHHHHHHCCCEEEECC
GTYVYEKRRESHPIFPLDRLPSTGVLPGHVWLKQALDSRKFLHVTWLNIYRHDFIRQHHF
CEEEEECCCCCCCCCCHHCCCCCCCCCHHHHHHHHHCCCCEEEEHHHHHHHHHHHHHHCC
HFEPGLRHQDIPWTTEALLAAERVQYTSQQFYDYYIHSESVSHKPDNDDTLMRSARHYMK
CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHEEECCCCCCCCCCHHHHHHHHHHHHH
ILEMLEAINQRYPDKVRHIAACRWQIAKEGLGIIHTFDSMKDESKKHVIINEFFDRGIWR
HHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCEEEEHHHHCCCCCCEEEHHHHHHHHHHH
LIWKNACTFRLRWRLGRRYLRIKRYRHAG
HHHHCCCEEEHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8041620; 9278503; 2647748 [H]