| Definition | Klebsiella pneumoniae NTUH-K2044 chromosome, complete genome. |
|---|---|
| Accession | NC_012731 |
| Length | 5,248,520 |
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The map label for this gene is selA [H]
Identifier: 238897040
GI number: 238897040
Start: 5035227
End: 5036615
Strand: Reverse
Name: selA [H]
Synonym: KP1_5287
Alternate gene names: 238897040
Gene position: 5036615-5035227 (Counterclockwise)
Preceding gene: 238897041
Following gene: 238897039
Centisome position: 95.96
GC content: 65.08
Gene sequence:
>1389_bases ATGACTACCGAAATTCGTGCGCTTTATACCCGGCTTCCGGCCATTGACCGCTTATTACGCGACCCCGCTTTTTCTTCCCT GCTGGCGCAGCACGGCCATTCGCAGGTGGTGGCGCAGCTGCGCCAGATGCTGGATGAGGCGCGGGAGCAAATCCGCCAGT ATCAGACACTGCCGGACTGGAGCCATGACTGGCCGAGCGCCTGCGCGCAGCGGCTCACCGCCGGCCGGCAGAGCGCCCTG CGTCCGGTATTTAATCTCACCGGTACGGTATTGCATACCAATCTGGGGCGCGCCATCCAGGCGGAGTCGGCCGTGGAGGC GGTCGCCAGCGCGATGCGCGCGCCGGTGACGCTCGAATATGATCTCGACGACGCCGGGCGCGGCCATCGCGATCGCGCCA TTGCCGATCTGCTGTGCCAGATCACCGGCGCGGAAGACGCCTGTATCGTGAACAACAACGCGGCGGCCGTTCTGCTGATG CTGGCGGCCACCGCCAGCGGTCGCGAAGTGGTGGTCTCTCGCGGCGAACTGGTGGAGATCGGCGGGGCATTTCGCATCCC CGACGTGATGCGCCAGGCGGGTTGCCAGCTGCACGAAGTGGGTACCACCAACCGCACCCATGCCAAAGATTATCGCCAGG CGGTGAATGACAATACCGCGCTGCTGATGAAGGTCCACACCAGCAACTACAGTATTGAGGGCTTTACCAAAGCCGTCGAC GAAGCGGAGCTGGCGGCCATTGGCCGCGAACTTGATGTCCCGGTGGTAGCCGACCTGGGCAGCGGGTCGCTGGTGGATCT CAGTCAGTATGGCCTGCCAAAGGAGCCGATGCCGCAGGAGATGATCGCCGCCGGGGTGAGCCTGGTCAGTTTCTCCGGCG ACAAGCTGCTCGGTGGCCCGCAGGCCGGGATTATCGTCGGCAAACGCGCGCTGATTGCCCAGCTGCAAAGCCATCCGCTG AAGCGGGCCCTGCGCGCCGATAAAATGACCCTCGCAGCGCTGGAGGCGACGCTGCGCCTCTATCAGCACCCGGAGGCGCT GAGGGAGAAATTGCCGACGCTGCGCCTGCTCACCCGTCCGGCGGAGGAGATCCGCCGGCGGGCTGAACGCCTGCAGCCTG GCCTGGCGGCACACTATGCTGATTTTGCCGTCAGCGTGGCAGCCTGCCAGTCGCAGATTGGCAGCGGCTCGTTACCCGTC GACCGCCTGCCCAGCGCGGCGTTGACCTTTACCCCGCATGACGGCCGCGGTAGCCGGCTGGAGGCGCTGGCGGCCCGCTG GCGCGCGCTGCCGTGTCCGGTGATTGGCCGCATTTATGACGGTCGGCTCTGGTTGGACCTGCGCTGTCTGGAAGATGAAA CCCGCTTTATGGAGATGTTGTTACGATGA
Upstream 100 bases:
>100_bases GCAGGTAACAGTTTGCGCAAGGAGGCGTTACAATCGCCGCTGATTGTTGACTCCCTCTCCCGTCGGGAGGGGGGAAAATA ACTTACCGCCAGGCCCATTC
Downstream 100 bases:
>100_bases TTATTGCCACCGCTGGACATGTTGACCACGGCAAAACGACGCTGCTGCAGGCGATAACCGGCGTGAATGCCGATCGTTTG CCGGAGGAGAAAGCGCGGGG
Product: selenocysteine synthase
Products: NA
Alternate protein names: Selenocysteine synthase; Sec synthase; Selenocysteinyl-tRNA(Sec) synthase [H]
Number of amino acids: Translated: 462; Mature: 461
Protein sequence:
>462_residues MTTEIRALYTRLPAIDRLLRDPAFSSLLAQHGHSQVVAQLRQMLDEAREQIRQYQTLPDWSHDWPSACAQRLTAGRQSAL RPVFNLTGTVLHTNLGRAIQAESAVEAVASAMRAPVTLEYDLDDAGRGHRDRAIADLLCQITGAEDACIVNNNAAAVLLM LAATASGREVVVSRGELVEIGGAFRIPDVMRQAGCQLHEVGTTNRTHAKDYRQAVNDNTALLMKVHTSNYSIEGFTKAVD EAELAAIGRELDVPVVADLGSGSLVDLSQYGLPKEPMPQEMIAAGVSLVSFSGDKLLGGPQAGIIVGKRALIAQLQSHPL KRALRADKMTLAALEATLRLYQHPEALREKLPTLRLLTRPAEEIRRRAERLQPGLAAHYADFAVSVAACQSQIGSGSLPV DRLPSAALTFTPHDGRGSRLEALAARWRALPCPVIGRIYDGRLWLDLRCLEDETRFMEMLLR
Sequences:
>Translated_462_residues MTTEIRALYTRLPAIDRLLRDPAFSSLLAQHGHSQVVAQLRQMLDEAREQIRQYQTLPDWSHDWPSACAQRLTAGRQSAL RPVFNLTGTVLHTNLGRAIQAESAVEAVASAMRAPVTLEYDLDDAGRGHRDRAIADLLCQITGAEDACIVNNNAAAVLLM LAATASGREVVVSRGELVEIGGAFRIPDVMRQAGCQLHEVGTTNRTHAKDYRQAVNDNTALLMKVHTSNYSIEGFTKAVD EAELAAIGRELDVPVVADLGSGSLVDLSQYGLPKEPMPQEMIAAGVSLVSFSGDKLLGGPQAGIIVGKRALIAQLQSHPL KRALRADKMTLAALEATLRLYQHPEALREKLPTLRLLTRPAEEIRRRAERLQPGLAAHYADFAVSVAACQSQIGSGSLPV DRLPSAALTFTPHDGRGSRLEALAARWRALPCPVIGRIYDGRLWLDLRCLEDETRFMEMLLR >Mature_461_residues TTEIRALYTRLPAIDRLLRDPAFSSLLAQHGHSQVVAQLRQMLDEAREQIRQYQTLPDWSHDWPSACAQRLTAGRQSALR PVFNLTGTVLHTNLGRAIQAESAVEAVASAMRAPVTLEYDLDDAGRGHRDRAIADLLCQITGAEDACIVNNNAAAVLLML AATASGREVVVSRGELVEIGGAFRIPDVMRQAGCQLHEVGTTNRTHAKDYRQAVNDNTALLMKVHTSNYSIEGFTKAVDE AELAAIGRELDVPVVADLGSGSLVDLSQYGLPKEPMPQEMIAAGVSLVSFSGDKLLGGPQAGIIVGKRALIAQLQSHPLK RALRADKMTLAALEATLRLYQHPEALREKLPTLRLLTRPAEEIRRRAERLQPGLAAHYADFAVSVAACQSQIGSGSLPVD RLPSAALTFTPHDGRGSRLEALAARWRALPCPVIGRIYDGRLWLDLRCLEDETRFMEMLLR
Specific function: Converts seryl-tRNA(Sec) to selenocysteinyl-tRNA(Sec) required for selenoprotein biosynthesis [H]
COG id: COG1921
COG function: function code E; Selenocysteine synthase [seryl-tRNASer selenium transferase]
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the selA family [H]
Homologues:
Organism=Escherichia coli, GI2367248, Length=463, Percent_Identity=83.3693304535637, Blast_Score=733, Evalue=0.0,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR015424 - InterPro: IPR015421 - InterPro: IPR018319 - InterPro: IPR004534 [H]
Pfam domain/function: PF03841 SelA [H]
EC number: =2.9.1.1 [H]
Molecular weight: Translated: 50457; Mature: 50325
Theoretical pI: Translated: 7.34; Mature: 7.34
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.5 %Cys (Translated Protein) 2.4 %Met (Translated Protein) 3.9 %Cys+Met (Translated Protein) 1.5 %Cys (Mature Protein) 2.2 %Met (Mature Protein) 3.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTTEIRALYTRLPAIDRLLRDPAFSSLLAQHGHSQVVAQLRQMLDEAREQIRQYQTLPDW CCCHHHHHHHHHHHHHHHHHCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCC SHDWPSACAQRLTAGRQSALRPVFNLTGTVLHTNLGRAIQAESAVEAVASAMRAPVTLEY CCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHCCCCHHHHHHHHHHHHHHHCCCEEEEE DLDDAGRGHRDRAIADLLCQITGAEDACIVNNNAAAVLLMLAATASGREVVVSRGELVEI CCCCCCCCCHHHHHHHHHHHHCCCCCEEEECCCHHHHHHHHHHCCCCCEEEEECCCEEEE GGAFRIPDVMRQAGCQLHEVGTTNRTHAKDYRQAVNDNTALLMKVHTSNYSIEGFTKAVD CCCCCCHHHHHHCCCEEEECCCCCCCHHHHHHHHHCCCCEEEEEEECCCCCCCHHHHHHH EAELAAIGRELDVPVVADLGSGSLVDLSQYGLPKEPMPQEMIAAGVSLVSFSGDKLLGGP HHHHHHHCCCCCCCEEEECCCCCEEEHHHCCCCCCCCCHHHHHCCHHHEEECCCCCCCCC QAGIIVGKRALIAQLQSHPLKRALRADKMTLAALEATLRLYQHPEALREKLPTLRLLTRP CCCEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHCCHHHHHHCC AEEIRRRAERLQPGLAAHYADFAVSVAACQSQIGSGSLPVDRLPSAALTFTPHDGRGSRL HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHCCCCEEEECCCCCCCHHH EALAARWRALPCPVIGRIYDGRLWLDLRCLEDETRFMEMLLR HHHHHHHHCCCCCHHHHEECCEEEEEEEECCHHHHHHHHHHC >Mature Secondary Structure TTEIRALYTRLPAIDRLLRDPAFSSLLAQHGHSQVVAQLRQMLDEAREQIRQYQTLPDW CCHHHHHHHHHHHHHHHHHCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCC SHDWPSACAQRLTAGRQSALRPVFNLTGTVLHTNLGRAIQAESAVEAVASAMRAPVTLEY CCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHCCCCHHHHHHHHHHHHHHHCCCEEEEE DLDDAGRGHRDRAIADLLCQITGAEDACIVNNNAAAVLLMLAATASGREVVVSRGELVEI CCCCCCCCCHHHHHHHHHHHHCCCCCEEEECCCHHHHHHHHHHCCCCCEEEEECCCEEEE GGAFRIPDVMRQAGCQLHEVGTTNRTHAKDYRQAVNDNTALLMKVHTSNYSIEGFTKAVD CCCCCCHHHHHHCCCEEEECCCCCCCHHHHHHHHHCCCCEEEEEEECCCCCCCHHHHHHH EAELAAIGRELDVPVVADLGSGSLVDLSQYGLPKEPMPQEMIAAGVSLVSFSGDKLLGGP HHHHHHHCCCCCCCEEEECCCCCEEEHHHCCCCCCCCCHHHHHCCHHHEEECCCCCCCCC QAGIIVGKRALIAQLQSHPLKRALRADKMTLAALEATLRLYQHPEALREKLPTLRLLTRP CCCEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHCCHHHHHHCC AEEIRRRAERLQPGLAAHYADFAVSVAACQSQIGSGSLPVDRLPSAALTFTPHDGRGSRL HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHCCCCEEEECCCCCCCHHH EALAARWRALPCPVIGRIYDGRLWLDLRCLEDETRFMEMLLR HHHHHHHHCCCCCHHHHEECCEEEEEEEECCHHHHHHHHHHC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA