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The map label for this gene is yhjD [H]

Identifier: 238896971

GI number: 238896971

Start: 4947063

End: 4948094

Strand: Direct

Name: yhjD [H]

Synonym: KP1_5213

Alternate gene names: 238896971

Gene position: 4947063-4948094 (Clockwise)

Preceding gene: 238896970

Following gene: 238896972

Centisome position: 94.26

GC content: 60.27

Gene sequence:

>1032_bases
ATGACGCCGGAAAACGACGATCGACGCCCGCCACAGGAACCGGATACGCAGCCGGAGAAAAGCAAAAGCACGCCCGAGGC
CCTCAATGACACCGCCGTCGGGCAAAAAGCCAGCCAGGCGCTGAAGACCGTCACCGGAACGGCGGCCAAAGTGCAGCGCA
ACCCGGTGATCGCCCATCTGTTGCGCGCCGCAGAGCGCTTCAATGACCGGCTCGGCAATCAGTTTGGGGCGGCTATCACC
TATTTCTCGTTCCTGTCGATGATCCCGATCCTGATGGTCTCCTTTGCCGCCGCCGGCTTCGTGCTGGCCTGGCACCCAAC
CCTGCTGCAGGACATTTTCGACAAAATTCTGCAAAACGTCAGCGACCCAACGCTGGCGGCAACGTTGAAAAACACCATCA
ACACCGCGGTGCAACAGCGCACCGCCGTCGGTCTGGTCGGCCTGCTGGTCGCCCTTTATTCCGGTATTAACTGGATGGGC
AACCTGCGCGAAGCGATCCGCGCTCAATCGCGCGACGTCTGGGAGCGCCGGCCGCAGGACGAGGAGAAAATCTGGGTAAA
GTACTTCCGCGATCTTATCTCGCTGATCGGTCTGCTGGTGGCGCTGATTATTACGCTGTCCATCACCTCCGTCGCCGGCT
CCGCCCAGCAGATGATTATCTCCGCGCTGTATCTCGACAACATTGAATGGCTGAAACCCGCCTGGCGGCTAATCGGCCTC
GCCATCTCGATTTTTGCCAACTATCTGCTCTTTTTCTGGATTTTCTGGCGCCTGCCGCGCCATCGTCCGCGGCGCAAGGC
CCTGTTTCGCGGCACGCTTATCGCGGCGATTGGCTTTGAAATCATAAAAATCGTCATGACCTGGACGCTGCCGGCGCTGG
TGAAATCCCCCTCCGGGGCGGCGTTCGGATCGGTGCTGGGGCTGATGGCCTTTTTCTATTTCTTCGCCCGCCTGACGCTA
TTCTGCGCCGCGTGGATCGCCACCGCGGAGTATAAAGACGACCGGCGGATGCCGGGCAAAACCCACCGCTGA

Upstream 100 bases:

>100_bases
CGGCCGGAAAACGGGCGGCGGGGAGAGGCATTCCTGCAGGATACGGCATTTAAGGTATACTTTTTGCTGAATCTCGCTGT
AAAAAAGGAAGAAATTACGT

Downstream 100 bases:

>100_bases
GGTATTGCGAGGATGAATAAAAGAGGCAAAATTCATCCTCGCGCTTGATTTCAGCAGATAAATCCAGCATGTAACTTTTA
TTTAACTCAAAACTGGTTTT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 343; Mature: 342

Protein sequence:

>343_residues
MTPENDDRRPPQEPDTQPEKSKSTPEALNDTAVGQKASQALKTVTGTAAKVQRNPVIAHLLRAAERFNDRLGNQFGAAIT
YFSFLSMIPILMVSFAAAGFVLAWHPTLLQDIFDKILQNVSDPTLAATLKNTINTAVQQRTAVGLVGLLVALYSGINWMG
NLREAIRAQSRDVWERRPQDEEKIWVKYFRDLISLIGLLVALIITLSITSVAGSAQQMIISALYLDNIEWLKPAWRLIGL
AISIFANYLLFFWIFWRLPRHRPRRKALFRGTLIAAIGFEIIKIVMTWTLPALVKSPSGAAFGSVLGLMAFFYFFARLTL
FCAAWIATAEYKDDRRMPGKTHR

Sequences:

>Translated_343_residues
MTPENDDRRPPQEPDTQPEKSKSTPEALNDTAVGQKASQALKTVTGTAAKVQRNPVIAHLLRAAERFNDRLGNQFGAAIT
YFSFLSMIPILMVSFAAAGFVLAWHPTLLQDIFDKILQNVSDPTLAATLKNTINTAVQQRTAVGLVGLLVALYSGINWMG
NLREAIRAQSRDVWERRPQDEEKIWVKYFRDLISLIGLLVALIITLSITSVAGSAQQMIISALYLDNIEWLKPAWRLIGL
AISIFANYLLFFWIFWRLPRHRPRRKALFRGTLIAAIGFEIIKIVMTWTLPALVKSPSGAAFGSVLGLMAFFYFFARLTL
FCAAWIATAEYKDDRRMPGKTHR
>Mature_342_residues
TPENDDRRPPQEPDTQPEKSKSTPEALNDTAVGQKASQALKTVTGTAAKVQRNPVIAHLLRAAERFNDRLGNQFGAAITY
FSFLSMIPILMVSFAAAGFVLAWHPTLLQDIFDKILQNVSDPTLAATLKNTINTAVQQRTAVGLVGLLVALYSGINWMGN
LREAIRAQSRDVWERRPQDEEKIWVKYFRDLISLIGLLVALIITLSITSVAGSAQQMIISALYLDNIEWLKPAWRLIGLA
ISIFANYLLFFWIFWRLPRHRPRRKALFRGTLIAAIGFEIIKIVMTWTLPALVKSPSGAAFGSVLGLMAFFYFFARLTLF
CAAWIATAEYKDDRRMPGKTHR

Specific function: Unknown

COG id: COG1295

COG function: function code S; Predicted membrane protein

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1789939, Length=342, Percent_Identity=83.0409356725146, Blast_Score=578, Evalue=1e-166,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005274
- InterPro:   IPR004664 [H]

Pfam domain/function: PF03631 Ribonuclease_BN [H]

EC number: NA

Molecular weight: Translated: 38526; Mature: 38394

Theoretical pI: Translated: 10.57; Mature: 10.57

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTPENDDRRPPQEPDTQPEKSKSTPEALNDTAVGQKASQALKTVTGTAAKVQRNPVIAHL
CCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHH
LRAAERFNDRLGNQFGAAITYFSFLSMIPILMVSFAAAGFVLAWHPTLLQDIFDKILQNV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
SDPTLAATLKNTINTAVQQRTAVGLVGLLVALYSGINWMGNLREAIRAQSRDVWERRPQD
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCC
EEKIWVKYFRDLISLIGLLVALIITLSITSVAGSAQQMIISALYLDNIEWLKPAWRLIGL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
AISIFANYLLFFWIFWRLPRHRPRRKALFRGTLIAAIGFEIIKIVMTWTLPALVKSPSGA
HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCH
AFGSVLGLMAFFYFFARLTLFCAAWIATAEYKDDRRMPGKTHR
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC
>Mature Secondary Structure 
TPENDDRRPPQEPDTQPEKSKSTPEALNDTAVGQKASQALKTVTGTAAKVQRNPVIAHL
CCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHH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HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8041620; 9278503 [H]