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The map label for this gene is yhjC [H]

Identifier: 238896970

GI number: 238896970

Start: 4946057

End: 4946956

Strand: Direct

Name: yhjC [H]

Synonym: KP1_5212

Alternate gene names: 238896970

Gene position: 4946057-4946956 (Clockwise)

Preceding gene: 238896968

Following gene: 238896971

Centisome position: 94.24

GC content: 61.0

Gene sequence:

>900_bases
ATGGATAAAATTCATGCAATGCAGTTATTCATTCGCGTAGCGGATCTGGAGAGCTTCTCCCGCGCCGCCGAGACCCTGGC
GCTACCTAAGGGTAGCGTCTCGCGACAGATTCAGGCCCTGGAAAGCCATCTTGGCGTGCGGCTCCTGCACCGCACCACCC
GCCGGGTCCAGCTCACCCAGGATGGGATGGTCTACTACGAGCGGGCGAAAGATCTGCTGAGCAACCTCGACGAACTGGAC
GGCATGTTCCAGCACGATCCGGCGAGCATCAGCGGCCGGCTGCGGGTGGATATGCCGGTCGGTTTTGCTAAAAAAATGGT
GATCCCGCATCTGCCGACTTTTTTACAGCAATATCCGGGCATCGAACTGGAGCTGAGCAGCAGCGATCGGCTGGTGGACG
TGATCCGCGAGGGGTTTGACTGCGTGGTGCGCGTCGGCGCGCTCAAAGACTCAGGGCTGATTGCCCGGCCGCTGGGCAAG
CTGACGCAAATTAACTGCGCCAGCCCGGACTATCTGGCGCGTTTTGGCTATCCGCAATCCCTGGAGGATCTGGCGGATCA
TGCCCTGATCCACTACGCCAGCACCCTCGGGGTCCGTCCCCCCGGCTTTGAGGTAATGATCGACGGCGCGGTGCGCTGGG
TAAAAACCGGCGGCATATTGACGGTCAACAGTACGGAAACCTATCAGGCAGCCTGTATCGCCGGGCTGGGGATTATTCAG
GTGCCACGCACCGGCGTGCGCGAGGCGTTACGCGCCGGCGACCTGATTGAGATCCTGCCCCAGTACCGCGCCGAGCCGCT
GCCGGTCTCGCTGATCTACCCGCACCGGCGCAATCTCTCCCGCCGGGTAAATCTGTTTATGGAGTGGCTGGGCGGGCTTA
TGAAAGCGTATGTCGATTGA

Upstream 100 bases:

>100_bases
TGCGTTGTGATTGTGTTGTAGCTTATTAACTGCTCATGCAACAATAAATACGCTATATTGCGTTTTACTGTTTCAGTAAC
AACAACAATAGGCGATCGGC

Downstream 100 bases:

>100_bases
GCGGCGCGGCCGGAAAACGGGCGGCGGGGAGAGGCATTCCTGCAGGATACGGCATTTAAGGTATACTTTTTGCTGAATCT
CGCTGTAAAAAAGGAAGAAA

Product: putative LysR-family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 299; Mature: 299

Protein sequence:

>299_residues
MDKIHAMQLFIRVADLESFSRAAETLALPKGSVSRQIQALESHLGVRLLHRTTRRVQLTQDGMVYYERAKDLLSNLDELD
GMFQHDPASISGRLRVDMPVGFAKKMVIPHLPTFLQQYPGIELELSSSDRLVDVIREGFDCVVRVGALKDSGLIARPLGK
LTQINCASPDYLARFGYPQSLEDLADHALIHYASTLGVRPPGFEVMIDGAVRWVKTGGILTVNSTETYQAACIAGLGIIQ
VPRTGVREALRAGDLIEILPQYRAEPLPVSLIYPHRRNLSRRVNLFMEWLGGLMKAYVD

Sequences:

>Translated_299_residues
MDKIHAMQLFIRVADLESFSRAAETLALPKGSVSRQIQALESHLGVRLLHRTTRRVQLTQDGMVYYERAKDLLSNLDELD
GMFQHDPASISGRLRVDMPVGFAKKMVIPHLPTFLQQYPGIELELSSSDRLVDVIREGFDCVVRVGALKDSGLIARPLGK
LTQINCASPDYLARFGYPQSLEDLADHALIHYASTLGVRPPGFEVMIDGAVRWVKTGGILTVNSTETYQAACIAGLGIIQ
VPRTGVREALRAGDLIEILPQYRAEPLPVSLIYPHRRNLSRRVNLFMEWLGGLMKAYVD
>Mature_299_residues
MDKIHAMQLFIRVADLESFSRAAETLALPKGSVSRQIQALESHLGVRLLHRTTRRVQLTQDGMVYYERAKDLLSNLDELD
GMFQHDPASISGRLRVDMPVGFAKKMVIPHLPTFLQQYPGIELELSSSDRLVDVIREGFDCVVRVGALKDSGLIARPLGK
LTQINCASPDYLARFGYPQSLEDLADHALIHYASTLGVRPPGFEVMIDGAVRWVKTGGILTVNSTETYQAACIAGLGIIQ
VPRTGVREALRAGDLIEILPQYRAEPLPVSLIYPHRRNLSRRVNLFMEWLGGLMKAYVD

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI145693193, Length=299, Percent_Identity=68.2274247491639, Blast_Score=428, Evalue=1e-121,
Organism=Escherichia coli, GI1786401, Length=293, Percent_Identity=32.0819112627986, Blast_Score=155, Evalue=2e-39,
Organism=Escherichia coli, GI1789639, Length=293, Percent_Identity=30.7167235494881, Blast_Score=148, Evalue=4e-37,
Organism=Escherichia coli, GI87081978, Length=292, Percent_Identity=33.9041095890411, Blast_Score=134, Evalue=9e-33,
Organism=Escherichia coli, GI1787589, Length=291, Percent_Identity=30.5841924398625, Blast_Score=124, Evalue=1e-29,
Organism=Escherichia coli, GI1787128, Length=286, Percent_Identity=27.972027972028, Blast_Score=118, Evalue=5e-28,
Organism=Escherichia coli, GI1789440, Length=282, Percent_Identity=28.7234042553192, Blast_Score=117, Evalue=9e-28,
Organism=Escherichia coli, GI1789173, Length=191, Percent_Identity=32.9842931937173, Blast_Score=92, Evalue=3e-20,
Organism=Escherichia coli, GI1788706, Length=191, Percent_Identity=28.7958115183246, Blast_Score=74, Evalue=1e-14,
Organism=Escherichia coli, GI1790399, Length=306, Percent_Identity=25.4901960784314, Blast_Score=72, Evalue=5e-14,
Organism=Escherichia coli, GI1786448, Length=282, Percent_Identity=24.468085106383, Blast_Score=71, Evalue=7e-14,
Organism=Escherichia coli, GI1788481, Length=303, Percent_Identity=25.0825082508251, Blast_Score=65, Evalue=4e-12,
Organism=Escherichia coli, GI157672245, Length=156, Percent_Identity=31.4102564102564, Blast_Score=64, Evalue=1e-11,
Organism=Escherichia coli, GI1790783, Length=262, Percent_Identity=24.0458015267176, Blast_Score=63, Evalue=3e-11,
Organism=Escherichia coli, GI1788748, Length=255, Percent_Identity=29.4117647058824, Blast_Score=62, Evalue=5e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 33320; Mature: 33320

Theoretical pI: Translated: 8.09; Mature: 8.09

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDKIHAMQLFIRVADLESFSRAAETLALPKGSVSRQIQALESHLGVRLLHRTTRRVQLTQ
CCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHEEECC
DGMVYYERAKDLLSNLDELDGMFQHDPASISGRLRVDMPVGFAKKMVIPHLPTFLQQYPG
CCHHHHHHHHHHHHHHHHHCCHHCCCCCCCCCEEEEECCCCHHHHHHHCCCHHHHHHCCC
IELELSSSDRLVDVIREGFDCVVRVGALKDSGLIARPLGKLTQINCASPDYLARFGYPQS
CEEEECCCCHHHHHHHCCHHHEEEECCCCCCCCCHHCCCCHHEECCCCCHHHHHCCCCCC
LEDLADHALIHYASTLGVRPPGFEVMIDGAVRWVKTGGILTVNSTETYQAACIAGLGIIQ
HHHHHHHHHHHHHHHCCCCCCCCEEEECCCEEEEECCCEEEECCCCHHHHHHHHCCCCEE
VPRTGVREALRAGDLIEILPQYRAEPLPVSLIYPHRRNLSRRVNLFMEWLGGLMKAYVD
CCCHHHHHHHHCCCHHHHHHHHCCCCCCEEEECCCHHCHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MDKIHAMQLFIRVADLESFSRAAETLALPKGSVSRQIQALESHLGVRLLHRTTRRVQLTQ
CCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHEEECC
DGMVYYERAKDLLSNLDELDGMFQHDPASISGRLRVDMPVGFAKKMVIPHLPTFLQQYPG
CCHHHHHHHHHHHHHHHHHCCHHCCCCCCCCCEEEEECCCCHHHHHHHCCCHHHHHHCCC
IELELSSSDRLVDVIREGFDCVVRVGALKDSGLIARPLGKLTQINCASPDYLARFGYPQS
CEEEECCCCHHHHHHHCCHHHEEEECCCCCCCCCHHCCCCHHEECCCCCHHHHHCCCCCC
LEDLADHALIHYASTLGVRPPGFEVMIDGAVRWVKTGGILTVNSTETYQAACIAGLGIIQ
HHHHHHHHHHHHHHHCCCCCCCCEEEECCCEEEEECCCEEEECCCCHHHHHHHHCCCCEE
VPRTGVREALRAGDLIEILPQYRAEPLPVSLIYPHRRNLSRRVNLFMEWLGGLMKAYVD
CCCHHHHHHHHCCCHHHHHHHHCCCCCCEEEECCCHHCHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8041620; 9278503 [H]