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The map label for this gene is allS [H]

Identifier: 238896946

GI number: 238896946

Start: 4919861

End: 4920727

Strand: Direct

Name: allS [H]

Synonym: KP1_5187

Alternate gene names: 238896946

Gene position: 4919861-4920727 (Clockwise)

Preceding gene: 238896937

Following gene: 238896947

Centisome position: 93.74

GC content: 65.4

Gene sequence:

>867_bases
TTGATTATGCACAAGACAACCCTGGAGCAGTGGGCGTTACTCGAAAAGGTAGTGGAATTGGGGAGCTTTGCCAGAGCGGC
GGAGGAGACCAATCGCAGTCAGTCATCGGTAAGCTATAACCTCGCGCTGCTGCAGGAGCGCTTAGGCGTGGCGCTGCTGG
CGCCGTCCGGCCGGCGGGCGGTGCTGACGCCGGCTGGCGAACTACTGCTGAATCAGGTCAAGCCGCTGCTGCAGGCCTTC
GCCTACGTCGAGACGCACGCCGCCACTCTGCGCAACGGGGCGCGGACCCGCCTGGATCTGGTGGTCGACAGTATTTTCCC
GCGCCAGCGGCTGTTCGCGATTTTACGCCAGTTTCAGCAGCGCTATCCGCAGACCCAGGTCAGGCTCACCGAAGTGCTGG
AAAACCTGGATGACGAGAGCGCGGCGCGGACGGAAGCCGATGTGATGGTGCTGACCCGCCGCCAGGATATTACCGGCCGC
GGGGAGTGGCTGATGAATATTGATTTCATCGCCGTCGCCCACCGCGACCACCCTCTCGCCGCGCTGGACGGACCGCTGGA
GGATAGCGCGCTGGCGCCGTGGCCGCTGGTGCGCATTGCCGATCAGGGCGGCGATAGCCAGGCGCCGCGAGACGCCTGGA
CCTTCTCCACCATTGATGCCGCCATTGATGCGGTGATGTATCAGGTCGGCTTCGGCTGGCTGCCGGAGGAGCGCATTCGC
CCCCATCTCGACCAGGGCGTGCTGAAGCGGTTGCCCCTCAGCCATGGCGCGCGCCGCGCGACGCCGCTGCATCTGATCGT
CAAGCGGGACCTGGCGCCGATCGACGAACAGGTGGCCACGCTGCTGGCGTTGTTCCGGACGCCCTGA

Upstream 100 bases:

>100_bases
GCTCATCATTTATTCTCCTCTGTTTTGTTGAGGACAGCATACGTCTTTAAAAAATGAATGAATAACGCTATGTTTGGATT
AAATACATTCAAATTTTAGA

Downstream 100 bases:

>100_bases
GGGGTAAGGCGGCGCTGGTCGCCTGGGCGTAATGATACGATTTTCTTATACTTTCCGGCGCAATATTGATCCAGGTTACT
CCCAAAGTATGATGAATCAC

Product: putative LysR-family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 288; Mature: 288

Protein sequence:

>288_residues
MIMHKTTLEQWALLEKVVELGSFARAAEETNRSQSSVSYNLALLQERLGVALLAPSGRRAVLTPAGELLLNQVKPLLQAF
AYVETHAATLRNGARTRLDLVVDSIFPRQRLFAILRQFQQRYPQTQVRLTEVLENLDDESAARTEADVMVLTRRQDITGR
GEWLMNIDFIAVAHRDHPLAALDGPLEDSALAPWPLVRIADQGGDSQAPRDAWTFSTIDAAIDAVMYQVGFGWLPEERIR
PHLDQGVLKRLPLSHGARRATPLHLIVKRDLAPIDEQVATLLALFRTP

Sequences:

>Translated_288_residues
MIMHKTTLEQWALLEKVVELGSFARAAEETNRSQSSVSYNLALLQERLGVALLAPSGRRAVLTPAGELLLNQVKPLLQAF
AYVETHAATLRNGARTRLDLVVDSIFPRQRLFAILRQFQQRYPQTQVRLTEVLENLDDESAARTEADVMVLTRRQDITGR
GEWLMNIDFIAVAHRDHPLAALDGPLEDSALAPWPLVRIADQGGDSQAPRDAWTFSTIDAAIDAVMYQVGFGWLPEERIR
PHLDQGVLKRLPLSHGARRATPLHLIVKRDLAPIDEQVATLLALFRTP
>Mature_288_residues
MIMHKTTLEQWALLEKVVELGSFARAAEETNRSQSSVSYNLALLQERLGVALLAPSGRRAVLTPAGELLLNQVKPLLQAF
AYVETHAATLRNGARTRLDLVVDSIFPRQRLFAILRQFQQRYPQTQVRLTEVLENLDDESAARTEADVMVLTRRQDITGR
GEWLMNIDFIAVAHRDHPLAALDGPLEDSALAPWPLVRIADQGGDSQAPRDAWTFSTIDAAIDAVMYQVGFGWLPEERIR
PHLDQGVLKRLPLSHGARRATPLHLIVKRDLAPIDEQVATLLALFRTP

Specific function: Positive regulator essential for the expression of allD operon. Binds to the allD promoter [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1786713, Length=247, Percent_Identity=27.9352226720648, Blast_Score=84, Evalue=7e-18,
Organism=Escherichia coli, GI1789492, Length=257, Percent_Identity=28.0155642023346, Blast_Score=77, Evalue=1e-15,
Organism=Escherichia coli, GI1787949, Length=191, Percent_Identity=29.3193717277487, Blast_Score=72, Evalue=4e-14,
Organism=Escherichia coli, GI1786401, Length=134, Percent_Identity=34.3283582089552, Blast_Score=70, Evalue=1e-13,
Organism=Escherichia coli, GI87082024, Length=255, Percent_Identity=24.7058823529412, Blast_Score=69, Evalue=5e-13,
Organism=Escherichia coli, GI1786508, Length=241, Percent_Identity=22.4066390041494, Blast_Score=67, Evalue=2e-12,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 32227; Mature: 32227

Theoretical pI: Translated: 6.64; Mature: 6.64

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIMHKTTLEQWALLEKVVELGSFARAAEETNRSQSSVSYNLALLQERLGVALLAPSGRRA
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCEEEECCCCCEE
VLTPAGELLLNQVKPLLQAFAYVETHAATLRNGARTRLDLVVDSIFPRQRLFAILRQFQQ
EECCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCHHHHHHHHHHHHH
RYPQTQVRLTEVLENLDDESAARTEADVMVLTRRQDITGRGEWLMNIDFIAVAHRDHPLA
HCCHHHHHHHHHHHCCCCHHHHHHHHHEEEEEECCCCCCCCCEEEEEEEEEEECCCCCCH
ALDGPLEDSALAPWPLVRIADQGGDSQAPRDAWTFSTIDAAIDAVMYQVGFGWLPEERIR
HCCCCCCCCCCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHC
PHLDQGVLKRLPLSHGARRATPLHLIVKRDLAPIDEQVATLLALFRTP
CCHHHHHHHHCCCCCCCCCCCHHEEEECCCCCCHHHHHHHHHHHHCCC
>Mature Secondary Structure
MIMHKTTLEQWALLEKVVELGSFARAAEETNRSQSSVSYNLALLQERLGVALLAPSGRRA
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCEEEECCCCCEE
VLTPAGELLLNQVKPLLQAFAYVETHAATLRNGARTRLDLVVDSIFPRQRLFAILRQFQQ
EECCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCHHHHHHHHHHHHH
RYPQTQVRLTEVLENLDDESAARTEADVMVLTRRQDITGRGEWLMNIDFIAVAHRDHPLA
HCCHHHHHHHHHHHCCCCHHHHHHHHHEEEEEECCCCCCCCCEEEEEEEEEEECCCCCCH
ALDGPLEDSALAPWPLVRIADQGGDSQAPRDAWTFSTIDAAIDAVMYQVGFGWLPEERIR
HCCCCCCCCCCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHC
PHLDQGVLKRLPLSHGARRATPLHLIVKRDLAPIDEQVATLLALFRTP
CCHHHHHHHHCCCCCCCCCCCHHEEEECCCCCCHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA