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The map label for this gene is yfbE [H]

Identifier: 238896944

GI number: 238896944

Start: 4917727

End: 4918866

Strand: Reverse

Name: yfbE [H]

Synonym: KP1_5185

Alternate gene names: 238896944

Gene position: 4918866-4917727 (Counterclockwise)

Preceding gene: 238896945

Following gene: 238896943

Centisome position: 93.72

GC content: 61.23

Gene sequence:

>1140_bases
ATGAGCGATTTTTTGCCTTTTTCGCGCCCGTCGATGGGCGACGCAGAGCTGGCTGCGCTGCGTGAAGTTTTAGCGTCGGG
CTGGATCACCACCGGGCCGAAGAATCAGGCACTTGAAGCGGCATTCTGCCAGCTGACCGGCAACCGTCATGCGATTGCCG
TCAGTTCAGCGACCGGCGGGATGCATGTGACCCTGATGGCGCTGGGTATTGGCCCCGGCGATGAAGTCATTACGCCGTCC
CAGACCTGGGTCTCCACTCTCAATATGATCTGCCTGCTGGGCGCCACGCCGGTGATGATCGATGTCGATAACGACAATCT
GATGATTACCCCTGCAGCGGTGGAAGCGGCGATCACCTCGCGTACCAAAGCGATAATTCCCGTGCATTACGCCGGGGCGC
CAGCCGACATTGACGCCATTCGCGCGGTGGGCGAGCGCCATGGCATTTCGGTGATCGAAGACGCCGCCCATGCGGCCGGT
ACCCATTATAAAGGCCGCCACGTGGGCTGGCAGGGGACCGCCATTTTCTCGTTCCACGCGATCAAAAACATGACCTGCGC
CGAAGGCGGGCTGATTGTCACCGACGACGACGAGCTGGCCTCCCGCATCCGTAGCCTGAAATTCCATGGTCTGGGCGTGG
ACGCTTATGATCGCCAGACCCACGGCCGCGCGCCGCAGGCGGAGGTGATCACCCCGGGCTTCAAGTACAACCTTGCCGAT
ATTAACGCCGCTCTGGCGCTGGTCCAGCTGGAAAAACTGAGCCACGCCAATCAGCGCCGGACCGAGATTGCCCAGCGCTA
CCTGCGCGAGCTGGCGGACACGCCGTTTAAACCGCTGAGCGTCCCGACATGGGATCACCAGCACGCCTGGCATCTGTTTA
TCATCCGCGTCGATGAGGCCGCGTGCGGCATCAGCCGCGACGCGCTGATGGAAAAGCTGAAGGCGATGGGCATCGGCACC
GGCCTGCACTTCCGTGCGGCCCATACGCAAAAATATTACCGCGAGCGCTTCCCTGAGGTTTCCCTGCCGAATACCGAATG
GAACAGCGCCCGCATCTGCTCTCTCCCGTTGTTCCCGGATATGACCGATGACGATGTCACTCGCGTTATCTCCGCACTGC
GCCAGTTGTCAGGACGTTGA

Upstream 100 bases:

>100_bases
GAACTCACTTCATTTTAATTTCGTTTAAGTCCGCAGGCGCAGGATATTTTATTCTAACGACCCAGATTCGTGCGTGGGTC
ATCTACAGAACAGGATGATG

Downstream 100 bases:

>100_bases
TATGCTTACTTACCCTCCCGTGAAGAAGGTCTCGGTGGTTATCCCGGTTTATAACGAACAGGATAGCCTGCCGGAACTGC
TTCGTCGTTCGGATGCCGCC

Product: UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferase

Products: NA

Alternate protein names: UDP-(beta-L-threo-pentapyranosyl-4''-ulose diphosphate) aminotransferase; UDP-Ara4O aminotransferase; UDP-4-amino-4-deoxy-L-arabinose aminotransferase [H]

Number of amino acids: Translated: 379; Mature: 378

Protein sequence:

>379_residues
MSDFLPFSRPSMGDAELAALREVLASGWITTGPKNQALEAAFCQLTGNRHAIAVSSATGGMHVTLMALGIGPGDEVITPS
QTWVSTLNMICLLGATPVMIDVDNDNLMITPAAVEAAITSRTKAIIPVHYAGAPADIDAIRAVGERHGISVIEDAAHAAG
THYKGRHVGWQGTAIFSFHAIKNMTCAEGGLIVTDDDELASRIRSLKFHGLGVDAYDRQTHGRAPQAEVITPGFKYNLAD
INAALALVQLEKLSHANQRRTEIAQRYLRELADTPFKPLSVPTWDHQHAWHLFIIRVDEAACGISRDALMEKLKAMGIGT
GLHFRAAHTQKYYRERFPEVSLPNTEWNSARICSLPLFPDMTDDDVTRVISALRQLSGR

Sequences:

>Translated_379_residues
MSDFLPFSRPSMGDAELAALREVLASGWITTGPKNQALEAAFCQLTGNRHAIAVSSATGGMHVTLMALGIGPGDEVITPS
QTWVSTLNMICLLGATPVMIDVDNDNLMITPAAVEAAITSRTKAIIPVHYAGAPADIDAIRAVGERHGISVIEDAAHAAG
THYKGRHVGWQGTAIFSFHAIKNMTCAEGGLIVTDDDELASRIRSLKFHGLGVDAYDRQTHGRAPQAEVITPGFKYNLAD
INAALALVQLEKLSHANQRRTEIAQRYLRELADTPFKPLSVPTWDHQHAWHLFIIRVDEAACGISRDALMEKLKAMGIGT
GLHFRAAHTQKYYRERFPEVSLPNTEWNSARICSLPLFPDMTDDDVTRVISALRQLSGR
>Mature_378_residues
SDFLPFSRPSMGDAELAALREVLASGWITTGPKNQALEAAFCQLTGNRHAIAVSSATGGMHVTLMALGIGPGDEVITPSQ
TWVSTLNMICLLGATPVMIDVDNDNLMITPAAVEAAITSRTKAIIPVHYAGAPADIDAIRAVGERHGISVIEDAAHAAGT
HYKGRHVGWQGTAIFSFHAIKNMTCAEGGLIVTDDDELASRIRSLKFHGLGVDAYDRQTHGRAPQAEVITPGFKYNLADI
NAALALVQLEKLSHANQRRTEIAQRYLRELADTPFKPLSVPTWDHQHAWHLFIIRVDEAACGISRDALMEKLKAMGIGTG
LHFRAAHTQKYYRERFPEVSLPNTEWNSARICSLPLFPDMTDDDVTRVISALRQLSGR

Specific function: Catalyzes the conversion of UDP-4-keto-arabinose (UDP- Ara4O) to UDP-4-amino-4-deoxy-L-arabinose (UDP-L-Ara4N). The modified arabinose is attached to lipid A and is required for resistance to polymyxin and cationic antimicrobial peptides [H]

COG id: COG0399

COG function: function code M; Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the degT/dnrJ/eryC1 family. ArnB subfamily [H]

Homologues:

Organism=Escherichia coli, GI145693159, Length=379, Percent_Identity=79.4195250659631, Blast_Score=622, Evalue=1e-179,
Organism=Escherichia coli, GI2367285, Length=388, Percent_Identity=32.4742268041237, Blast_Score=160, Evalue=1e-40,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR022850
- InterPro:   IPR000653
- InterPro:   IPR015424
- InterPro:   IPR015421
- InterPro:   IPR015422 [H]

Pfam domain/function: PF01041 DegT_DnrJ_EryC1 [H]

EC number: =2.6.1.87 [H]

Molecular weight: Translated: 41277; Mature: 41145

Theoretical pI: Translated: 6.72; Mature: 6.72

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSDFLPFSRPSMGDAELAALREVLASGWITTGPKNQALEAAFCQLTGNRHAIAVSSATGG
CCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCCEEEEEECCCCC
MHVTLMALGIGPGDEVITPSQTWVSTLNMICLLGATPVMIDVDNDNLMITPAAVEAAITS
EEEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEECCCCEEEEHHHHHHHHHC
RTKAIIPVHYAGAPADIDAIRAVGERHGISVIEDAAHAAGTHYKGRHVGWQGTAIFSFHA
CCEEEEEEEECCCCCCHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCEEEEEEHH
IKNMTCAEGGLIVTDDDELASRIRSLKFHGLGVDAYDRQTHGRAPQAEVITPGFKYNLAD
HCCCEECCCCEEEECCHHHHHHHHHHEEECCCCCCCCCCCCCCCCCCCEECCCCEEEHHH
INAALALVQLEKLSHANQRRTEIAQRYLRELADTPFKPLSVPTWDHQHAWHLFIIRVDEA
HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEEECCH
ACGISRDALMEKLKAMGIGTGLHFRAAHTQKYYRERFPEVSLPNTEWNSARICSLPLFPD
HCCCCHHHHHHHHHHHCCCCCCEEEHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCC
MTDDDVTRVISALRQLSGR
CCCHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
SDFLPFSRPSMGDAELAALREVLASGWITTGPKNQALEAAFCQLTGNRHAIAVSSATGG
CCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCCEEEEEECCCCC
MHVTLMALGIGPGDEVITPSQTWVSTLNMICLLGATPVMIDVDNDNLMITPAAVEAAITS
EEEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEECCCCEEEEHHHHHHHHHC
RTKAIIPVHYAGAPADIDAIRAVGERHGISVIEDAAHAAGTHYKGRHVGWQGTAIFSFHA
CCEEEEEEEECCCCCCHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCEEEEEEHH
IKNMTCAEGGLIVTDDDELASRIRSLKFHGLGVDAYDRQTHGRAPQAEVITPGFKYNLAD
HCCCEECCCCEEEECCHHHHHHHHHHEEECCCCCCCCCCCCCCCCCCCEECCCCEEEHHH
INAALALVQLEKLSHANQRRTEIAQRYLRELADTPFKPLSVPTWDHQHAWHLFIIRVDEA
HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEEECCH
ACGISRDALMEKLKAMGIGTGLHFRAAHTQKYYRERFPEVSLPNTEWNSARICSLPLFPD
HCCCCHHHHHHHHHHHCCCCCCEEEHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCC
MTDDDVTRVISALRQLSGR
CCCHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA