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The map label for this gene is ttdB [H]

Identifier: 238896736

GI number: 238896736

Start: 4715692

End: 4716309

Strand: Reverse

Name: ttdB [H]

Synonym: KP1_4954

Alternate gene names: 238896736

Gene position: 4716309-4715692 (Counterclockwise)

Preceding gene: 238896737

Following gene: 238896735

Centisome position: 89.86

GC content: 46.12

Gene sequence:

>618_bases
ATGACTAAAAAAATACTCACTACGCCCATTAAAGATGAAGATTTAGCGGATATTAAAGCGGGCGATATAATTTATCTCAA
CGGCCATATTGTGACCTGCCGTGATGTGGCTCATCGTCGCTTAATTGAGGGCGGACGTGAATTACCGGTAAACGTTGCTG
GTGGCGCGATATTACATGCCGGGCCCATTGTGCGCCCGATTAAAGGTACGGAAGATAAATTTGAAATGGTCTCCGTTGGG
CCAACCACCAGTATGCGCATGGAAAAATTTGAAAAAGAATTTATTGCTAAGACCGGTGTGAAATTAATCGTCGGCAAAGG
CGGTATGGGCAAAGGAACCGAAGAGGGCTGTATGGAACATAAAGCCTTGCACTGTGTGTTCCCTGCCGGCTGCGCGGTAG
TCGCCGCGGTCTGTGTGGAAGAGATTGAAGATGCGCAATGGCGTGATTTAGGCATGCCAGAAACGTTATGGGTTTGCCGG
GTGAAAGAGTTCGGGCCGTTAATTGTATCGATCGATACTCACGGCAATAACCTGTTTGAGCAGAATAAAGTGATCTTTAA
TCAGCGCAAAGAAATTGTCGCCGATGAAATCTGCAAACACGTGAGCTTTATTAAATAA

Upstream 100 bases:

>100_bases
TGGCGGTCAACGTCGGCTGCTGGTCGCACCGTAAAGGACATATCGTTTTCGATAAAGACCTGAACTACACCATTACGTCT
CACACAGGAGTGGCATTCTG

Downstream 100 bases:

>100_bases
CCCCGATTGAATATATCGCGCAGTAATGGCAGCGGCAGCTGACTGCTTAACCGAGGCTTCTGACCAGGCGGTCCGGGGAA
ATCCACTCTGCTGACGTGGG

Product: L(+)-tartrate dehydratase subunit beta

Products: NA

Alternate protein names: L-TTD beta [H]

Number of amino acids: Translated: 205; Mature: 204

Protein sequence:

>205_residues
MTKKILTTPIKDEDLADIKAGDIIYLNGHIVTCRDVAHRRLIEGGRELPVNVAGGAILHAGPIVRPIKGTEDKFEMVSVG
PTTSMRMEKFEKEFIAKTGVKLIVGKGGMGKGTEEGCMEHKALHCVFPAGCAVVAAVCVEEIEDAQWRDLGMPETLWVCR
VKEFGPLIVSIDTHGNNLFEQNKVIFNQRKEIVADEICKHVSFIK

Sequences:

>Translated_205_residues
MTKKILTTPIKDEDLADIKAGDIIYLNGHIVTCRDVAHRRLIEGGRELPVNVAGGAILHAGPIVRPIKGTEDKFEMVSVG
PTTSMRMEKFEKEFIAKTGVKLIVGKGGMGKGTEEGCMEHKALHCVFPAGCAVVAAVCVEEIEDAQWRDLGMPETLWVCR
VKEFGPLIVSIDTHGNNLFEQNKVIFNQRKEIVADEICKHVSFIK
>Mature_204_residues
TKKILTTPIKDEDLADIKAGDIIYLNGHIVTCRDVAHRRLIEGGRELPVNVAGGAILHAGPIVRPIKGTEDKFEMVSVGP
TTSMRMEKFEKEFIAKTGVKLIVGKGGMGKGTEEGCMEHKALHCVFPAGCAVVAAVCVEEIEDAQWRDLGMPETLWVCRV
KEFGPLIVSIDTHGNNLFEQNKVIFNQRKEIVADEICKHVSFIK

Specific function: Unknown

COG id: COG1838

COG function: function code C; Tartrate dehydratase beta subunit/Fumarate hydratase class I, C-terminal domain

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the class-I fumarase family [H]

Homologues:

Organism=Escherichia coli, GI1789443, Length=203, Percent_Identity=68.9655172413793, Blast_Score=289, Evalue=8e-80,
Organism=Escherichia coli, GI1787897, Length=182, Percent_Identity=28.5714285714286, Blast_Score=83, Evalue=1e-17,
Organism=Escherichia coli, GI1790564, Length=182, Percent_Identity=28.5714285714286, Blast_Score=80, Evalue=7e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004647 [H]

Pfam domain/function: PF05683 Fumerase_C [H]

EC number: =4.2.1.32 [H]

Molecular weight: Translated: 22582; Mature: 22451

Theoretical pI: Translated: 6.86; Mature: 6.86

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.4 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
6.8 %Cys+Met (Translated Protein)
3.4 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
6.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTKKILTTPIKDEDLADIKAGDIIYLNGHIVTCRDVAHRRLIEGGRELPVNVAGGAILHA
CCCCEECCCCCCCCCCCCCCCCEEEECCEEEEHHHHHHHHHHHCCCCCCEEECCCEEEEC
GPIVRPIKGTEDKFEMVSVGPTTSMRMEKFEKEFIAKTGVKLIVGKGGMGKGTEEGCMEH
CCCEECCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHCCCEEEEECCCCCCCCHHHHHHH
KALHCVFPAGCAVVAAVCVEEIEDAQWRDLGMPETLWVCRVKEFGPLIVSIDTHGNNLFE
CCEEEECCHHHHHHHHHHHHHHCCCCHHCCCCCCCEEEEEECCCCCEEEEEECCCCCCHH
QNKVIFNQRKEIVADEICKHVSFIK
HHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
TKKILTTPIKDEDLADIKAGDIIYLNGHIVTCRDVAHRRLIEGGRELPVNVAGGAILHA
CCCEECCCCCCCCCCCCCCCCEEEECCEEEEHHHHHHHHHHHCCCCCCEEECCCEEEEC
GPIVRPIKGTEDKFEMVSVGPTTSMRMEKFEKEFIAKTGVKLIVGKGGMGKGTEEGCMEH
CCCEECCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHCCCEEEEECCCCCCCCHHHHHHH
KALHCVFPAGCAVVAAVCVEEIEDAQWRDLGMPETLWVCRVKEFGPLIVSIDTHGNNLFE
CCEEEECCHHHHHHHHHHHHHHCCCCHHCCCCCCCEEEEEECCCCCEEEEEECCCCCCHH
QNKVIFNQRKEIVADEICKHVSFIK
HHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]