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The map label for this gene is dacB [H]

Identifier: 238896689

GI number: 238896689

Start: 4669114

End: 4670547

Strand: Direct

Name: dacB [H]

Synonym: KP1_4901

Alternate gene names: 238896689

Gene position: 4669114-4670547 (Clockwise)

Preceding gene: 238896687

Following gene: 238896694

Centisome position: 88.96

GC content: 60.6

Gene sequence:

>1434_bases
ATGCGATTTCCCAGATTTATCATCGGATTGACCGCCGGTATAGCGCTTAGCGCTCAGGCGGCGAATATTGACGAGTACAT
CAACCAGCTTCCCGCCGGTGCGAACCTTGCCTTTATGGCGCAAAAGGTCGGCGCATCGACGCCGGAAATCGACTATCACA
GCCAGCAAATGGCGCTCCCGGCCAGTACGCAAAAGGTCATCACCGCGCTGGCGGCGCTGCTGCAACTGGGGCCCGATTTT
CGCTTTACCACCACGCTGGAAACCAAAGGTTCCCTTGACGGCGGCGTGCTGAAAGGCGACCTGATTGCACGCTTCGGCGG
CGATCCGACGCTTAAACGGCAGGATATTCGCAATATGGTGGCGACGCTGAAAAAAGCCGGCGTGCAGCGTATCGAAGGCA
ATGTGCTCATCGATACCTCGGTCTTCGCCAGCCATGACAAAGCGCCCGGCTGGCCGTGGAACGACCTGACGCAGTGCTTC
AGCGCCCCGCCGGCGGCGGCGATTGTCGACCGTAACTGCTTCTCTGTCTCGCTGTATAGCGCGCAGAAACCGGGCGATGT
CGCCTTCATTCGCGTTGCATCCTATTATCCGGTCACCATGTTCAGCCAGGTACGAACGCTGGCGCGTGGCTCATCGGAAG
CCCAGTATTGCGAGCTCGACGTGGTGCCGGGCGATCTCAATCGCTATACTCTCACCGGCTGCCTGCCGCAGCGTAGCGAG
CCGCTGCCTCTGGCCTTCGCCATTCAGGATGGCGCCAGCTATGCCGGAGCGATCCTCAAAGCCGAGCTGGCCCAGGCGGG
GATCACCTACAGCGGCACGCTGCTGCGCCAGACGCTGGCCAATGAGCCCGGCACCGTGCTGGCAACCAGCCAGTCGGCTC
CGCTGCACGATCTGCTGCGGATCATGCTGAAGAAGTCAGACAACATGATTGCCGACACCGTCTTTCGCACCATCGGCCAC
GCCCGGTTCGGCGTACCTGGCACCTGGCGGGCGGGCTCCGATGCCGTACGGCAGATCCTGCGTCAACAGGCTGGGGTCGA
TCTCGGCAACACTATCATCGCCGACGGCTCTGGCCTGTCGCGCCACAACCTGATCGCCCCGGCGACCATGATGCAGGTGC
TGCAGTATATCGCCCAGCACGATACCGAGCTCAACTTCATCTCCATGCTGCCGCTGGCGGGCCATGACGGATCGCTGCAG
TATCGCGCCGGTCTTCATCAGGCGGGCGTCGATGGTAAAGTTTCGGCGAAAACCGGGTCGCTCCAGGGGGTTTATAACCT
CGCAGGCTTCATCACTACCGCCAGCGGACAAAAGATGGCCTTCGTGCAATATCTCTCCGGATACGCCGTGGAGCCAGCTG
ATCAGCGCAATCGCCGCATCCCACTGGTCCGCTTTGAAAGCCGCTTGTATAAAGATTTGTACCAGAACAATTAA

Upstream 100 bases:

>100_bases
ATGGGTATTTTACCCCGAAGTTCATTATGGGTCATCGTTTACTTTACTGGGCGTTGCACCGTAGTATGACGGCCTGGCTT
CAGGTTGTTAGCGCGAGATT

Downstream 100 bases:

>100_bases
AACAAAAGGGCCGCATCAGATGCGGCCCTTTTTGATCCAGAGAAGTCAGGATTAGCGTTTGTAGATGAATTCGACGCCTT
CTTCGTCGTCCTCATCCCAG

Product: D-alanyl-D-alanine carboxypeptidase/endopeptidase

Products: NA

Alternate protein names: DD-carboxypeptidase; DD-peptidase; D-alanyl-D-alanine endopeptidase; DD-endopeptidase; Penicillin-binding protein 4; PBP-4 [H]

Number of amino acids: Translated: 477; Mature: 477

Protein sequence:

>477_residues
MRFPRFIIGLTAGIALSAQAANIDEYINQLPAGANLAFMAQKVGASTPEIDYHSQQMALPASTQKVITALAALLQLGPDF
RFTTTLETKGSLDGGVLKGDLIARFGGDPTLKRQDIRNMVATLKKAGVQRIEGNVLIDTSVFASHDKAPGWPWNDLTQCF
SAPPAAAIVDRNCFSVSLYSAQKPGDVAFIRVASYYPVTMFSQVRTLARGSSEAQYCELDVVPGDLNRYTLTGCLPQRSE
PLPLAFAIQDGASYAGAILKAELAQAGITYSGTLLRQTLANEPGTVLATSQSAPLHDLLRIMLKKSDNMIADTVFRTIGH
ARFGVPGTWRAGSDAVRQILRQQAGVDLGNTIIADGSGLSRHNLIAPATMMQVLQYIAQHDTELNFISMLPLAGHDGSLQ
YRAGLHQAGVDGKVSAKTGSLQGVYNLAGFITTASGQKMAFVQYLSGYAVEPADQRNRRIPLVRFESRLYKDLYQNN

Sequences:

>Translated_477_residues
MRFPRFIIGLTAGIALSAQAANIDEYINQLPAGANLAFMAQKVGASTPEIDYHSQQMALPASTQKVITALAALLQLGPDF
RFTTTLETKGSLDGGVLKGDLIARFGGDPTLKRQDIRNMVATLKKAGVQRIEGNVLIDTSVFASHDKAPGWPWNDLTQCF
SAPPAAAIVDRNCFSVSLYSAQKPGDVAFIRVASYYPVTMFSQVRTLARGSSEAQYCELDVVPGDLNRYTLTGCLPQRSE
PLPLAFAIQDGASYAGAILKAELAQAGITYSGTLLRQTLANEPGTVLATSQSAPLHDLLRIMLKKSDNMIADTVFRTIGH
ARFGVPGTWRAGSDAVRQILRQQAGVDLGNTIIADGSGLSRHNLIAPATMMQVLQYIAQHDTELNFISMLPLAGHDGSLQ
YRAGLHQAGVDGKVSAKTGSLQGVYNLAGFITTASGQKMAFVQYLSGYAVEPADQRNRRIPLVRFESRLYKDLYQNN
>Mature_477_residues
MRFPRFIIGLTAGIALSAQAANIDEYINQLPAGANLAFMAQKVGASTPEIDYHSQQMALPASTQKVITALAALLQLGPDF
RFTTTLETKGSLDGGVLKGDLIARFGGDPTLKRQDIRNMVATLKKAGVQRIEGNVLIDTSVFASHDKAPGWPWNDLTQCF
SAPPAAAIVDRNCFSVSLYSAQKPGDVAFIRVASYYPVTMFSQVRTLARGSSEAQYCELDVVPGDLNRYTLTGCLPQRSE
PLPLAFAIQDGASYAGAILKAELAQAGITYSGTLLRQTLANEPGTVLATSQSAPLHDLLRIMLKKSDNMIADTVFRTIGH
ARFGVPGTWRAGSDAVRQILRQQAGVDLGNTIIADGSGLSRHNLIAPATMMQVLQYIAQHDTELNFISMLPLAGHDGSLQ
YRAGLHQAGVDGKVSAKTGSLQGVYNLAGFITTASGQKMAFVQYLSGYAVEPADQRNRRIPLVRFESRLYKDLYQNN

Specific function: Not involved in transpeptidation but exclusively catalyzes a DD-carboxypeptidase and DD-endopeptidase reaction [H]

COG id: COG2027

COG function: function code M; D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 4)

Gene ontology:

Cell location: Periplasm (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase S13 family [H]

Homologues:

Organism=Escherichia coli, GI1789573, Length=477, Percent_Identity=90.356394129979, Blast_Score=903, Evalue=0.0,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012338
- InterPro:   IPR000667 [H]

Pfam domain/function: PF02113 Peptidase_S13 [H]

EC number: =3.4.16.4 [H]

Molecular weight: Translated: 51442; Mature: 51442

Theoretical pI: Translated: 8.97; Mature: 8.97

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRFPRFIIGLTAGIALSAQAANIDEYINQLPAGANLAFMAQKVGASTPEIDYHSQQMALP
CCCCHHHHHHHHCCEEECCCCCHHHHHHHCCCCCCHHHHHHHHCCCCCCCCCCCCCEECC
ASTQKVITALAALLQLGPDFRFTTTLETKGSLDGGVLKGDLIARFGGDPTLKRQDIRNMV
CHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCEEECHHHEECCCCCCCCHHHHHHHH
ATLKKAGVQRIEGNVLIDTSVFASHDKAPGWPWNDLTQCFSAPPAAAIVDRNCFSVSLYS
HHHHHHHHHHHCCCEEEEEHHHCCCCCCCCCCHHHHHHHHCCCCCHHEECCCCEEEEEEC
AQKPGDVAFIRVASYYPVTMFSQVRTLARGSSEAQYCELDVVPGDLNRYTLTGCLPQRSE
CCCCCCEEEEEEECCCCHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCEEEEECCCCCCC
PLPLAFAIQDGASYAGAILKAELAQAGITYSGTLLRQTLANEPGTVLATSQSAPLHDLLR
CCCEEEEEECCCCHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCEEEEECCCCCHHHHHH
IMLKKSDNMIADTVFRTIGHARFGVPGTWRAGSDAVRQILRQQAGVDLGNTIIADGSGLS
HHHHCCCCHHHHHHHHHHCCHHCCCCCCCCCCHHHHHHHHHHHCCCCCCCEEEECCCCCC
RHNLIAPATMMQVLQYIAQHDTELNFISMLPLAGHDGSLQYRAGLHQAGVDGKVSAKTGS
CCCCCCHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCEEHHCCCHHCCCCCEEECCCCC
LQGVYNLAGFITTASGQKMAFVQYLSGYAVEPADQRNRRIPLVRFESRLYKDLYQNN
CCHHHHHHHEEEECCCCHHHHHHHHCCCCCCCCHHCCCCCCEEHHHHHHHHHHHCCC
>Mature Secondary Structure
MRFPRFIIGLTAGIALSAQAANIDEYINQLPAGANLAFMAQKVGASTPEIDYHSQQMALP
CCCCHHHHHHHHCCEEECCCCCHHHHHHHCCCCCCHHHHHHHHCCCCCCCCCCCCCEECC
ASTQKVITALAALLQLGPDFRFTTTLETKGSLDGGVLKGDLIARFGGDPTLKRQDIRNMV
CHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCEEECHHHEECCCCCCCCHHHHHHHH
ATLKKAGVQRIEGNVLIDTSVFASHDKAPGWPWNDLTQCFSAPPAAAIVDRNCFSVSLYS
HHHHHHHHHHHCCCEEEEEHHHCCCCCCCCCCHHHHHHHHCCCCCHHEECCCCEEEEEEC
AQKPGDVAFIRVASYYPVTMFSQVRTLARGSSEAQYCELDVVPGDLNRYTLTGCLPQRSE
CCCCCCEEEEEEECCCCHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCEEEEECCCCCCC
PLPLAFAIQDGASYAGAILKAELAQAGITYSGTLLRQTLANEPGTVLATSQSAPLHDLLR
CCCEEEEEECCCCHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCEEEEECCCCCHHHHHH
IMLKKSDNMIADTVFRTIGHARFGVPGTWRAGSDAVRQILRQQAGVDLGNTIIADGSGLS
HHHHCCCCHHHHHHHHHHCCHHCCCCCCCCCCHHHHHHHHHHHCCCCCCCEEEECCCCCC
RHNLIAPATMMQVLQYIAQHDTELNFISMLPLAGHDGSLQYRAGLHQAGVDGKVSAKTGS
CCCCCCHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCEEHHCCCHHCCCCCEEECCCCC
LQGVYNLAGFITTASGQKMAFVQYLSGYAVEPADQRNRRIPLVRFESRLYKDLYQNN
CCHHHHHHHEEEECCCCHHHHHHHHCCCCCCCCHHCCCCCCEEHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 2040429; 9278503; 2046551 [H]