Click here to switch to the map view.

The map label for this gene is ygiB [C]

Identifier: 238896544

GI number: 238896544

Start: 4523598

End: 4524269

Strand: Direct

Name: ygiB [C]

Synonym: KP1_4731

Alternate gene names: 238896544

Gene position: 4523598-4524269 (Clockwise)

Preceding gene: 238896543

Following gene: 238896545

Centisome position: 86.19

GC content: 63.39

Gene sequence:

>672_bases
ATGAAACGGACAAAAAATATTAATCATTCGTCGTTCCGCAAAAGCTGGAGCGCACGCCATCTGACGCCGGTCGCGCTGGC
CGTTACCGCGGTCTTTATGCTCGCCGGTTGTGAAAAAAGCGACGAAACGGTGTCGCTGTACCAGAACGCCGATGACTGCT
CCGCCGCCAACCCTGGCAAAGCAGCCGAATGCACCACGGCCTACACCAACGCGGTAAAAGAGGCAGAGCGCACTGCGCCG
AAGTATGCCACCCGCGAAGACTGCGTCGCCGAGTTTGGCGAAGGCCAGTGCCAGCAGACGCCAGCCCAGGCGGGCGTCGC
CCCGGAAAACCAGGCGCAGGCGCAAAGCAGCGGCAGCTTCTGGATGCCGCTGATGGCCGGCTACATGATGGGCCGCCTGA
TGGGCGGCGGCATGGCGCAACAGCAGCCGCTGTTCAGCTCGAAAAATCCGGCCAGCCCGGCCTACGGTCAGTACACTGAC
GCCAGCGGCAAGAGCTATGGCGCCGCCCAGCCGGGCCGCACCATAAATGTGCCGAAAACCGCGATGGCGCCGAAGCCAGC
CACCACCACCACCGTCACCCGCGGCGGCTTTGGCGAGTCGGTAGCGAAACAGTCGACCATGCAGCGTAGCGCCGCAGGCT
CAACGTCCTCTTCTCGCTCAATGGGCGGCTAA

Upstream 100 bases:

>100_bases
AGATCCCCCGCTTAGCGCCCCTCTTCGCTTCATTTTCCACCACTCATCCTCTATCCTGAGCGTTAACACACGCCATACCA
CTGGGTCCTGGAAGACAAAT

Downstream 100 bases:

>100_bases
GCAACATGGAAAGAGTCAGTATTACCGAGCGCCCGGACTGGCGCGAGAAAGCGACCGAGTACGGTTTCAACTTCCATACC
ATGTACGGCGAGCCCTACTG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 223; Mature: 223

Protein sequence:

>223_residues
MKRTKNINHSSFRKSWSARHLTPVALAVTAVFMLAGCEKSDETVSLYQNADDCSAANPGKAAECTTAYTNAVKEAERTAP
KYATREDCVAEFGEGQCQQTPAQAGVAPENQAQAQSSGSFWMPLMAGYMMGRLMGGGMAQQQPLFSSKNPASPAYGQYTD
ASGKSYGAAQPGRTINVPKTAMAPKPATTTTVTRGGFGESVAKQSTMQRSAAGSTSSSRSMGG

Sequences:

>Translated_223_residues
MKRTKNINHSSFRKSWSARHLTPVALAVTAVFMLAGCEKSDETVSLYQNADDCSAANPGKAAECTTAYTNAVKEAERTAP
KYATREDCVAEFGEGQCQQTPAQAGVAPENQAQAQSSGSFWMPLMAGYMMGRLMGGGMAQQQPLFSSKNPASPAYGQYTD
ASGKSYGAAQPGRTINVPKTAMAPKPATTTTVTRGGFGESVAKQSTMQRSAAGSTSSSRSMGG
>Mature_223_residues
MKRTKNINHSSFRKSWSARHLTPVALAVTAVFMLAGCEKSDETVSLYQNADDCSAANPGKAAECTTAYTNAVKEAERTAP
KYATREDCVAEFGEGQCQQTPAQAGVAPENQAQAQSSGSFWMPLMAGYMMGRLMGGGMAQQQPLFSSKNPASPAYGQYTD
ASGKSYGAAQPGRTINVPKTAMAPKPATTTTVTRGGFGESVAKQSTMQRSAAGSTSSSRSMGG

Specific function: Unknown

COG id: COG5463

COG function: function code S; Predicted integral membrane protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0441 family [H]

Homologues:

Organism=Escherichia coli, GI145693179, Length=225, Percent_Identity=88.8888888888889, Blast_Score=404, Evalue=1e-114,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009576 [H]

Pfam domain/function: PF06693 DUF1190 [H]

EC number: NA

Molecular weight: Translated: 23362; Mature: 23362

Theoretical pI: Translated: 9.41; Mature: 9.41

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.2 %Cys     (Translated Protein)
4.9 %Met     (Translated Protein)
7.2 %Cys+Met (Translated Protein)
2.2 %Cys     (Mature Protein)
4.9 %Met     (Mature Protein)
7.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKRTKNINHSSFRKSWSARHLTPVALAVTAVFMLAGCEKSDETVSLYQNADDCSAANPGK
CCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCCCCCCC
AAECTTAYTNAVKEAERTAPKYATREDCVAEFGEGQCQQTPAQAGVAPENQAQAQSSGSF
CCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCCCCHHHCCCCCCHHHHHHCCCCC
WMPLMAGYMMGRLMGGGMAQQQPLFSSKNPASPAYGQYTDASGKSYGAAQPGRTINVPKT
HHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCH
AMAPKPATTTTVTRGGFGESVAKQSTMQRSAAGSTSSSRSMGG
HCCCCCCCCEEEECCCCCHHHHHHHHHHHHHCCCCCCCCCCCC
>Mature Secondary Structure
MKRTKNINHSSFRKSWSARHLTPVALAVTAVFMLAGCEKSDETVSLYQNADDCSAANPGK
CCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCCCCCCC
AAECTTAYTNAVKEAERTAPKYATREDCVAEFGEGQCQQTPAQAGVAPENQAQAQSSGSF
CCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCCCCHHHCCCCCCHHHHHHCCCCC
WMPLMAGYMMGRLMGGGMAQQQPLFSSKNPASPAYGQYTDASGKSYGAAQPGRTINVPKT
HHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCH
AMAPKPATTTTVTRGGFGESVAKQSTMQRSAAGSTSSSRSMGG
HCCCCCCCCEEEECCCCCHHHHHHHHHHHHHCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA