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The map label for this gene is yggS [H]

Identifier: 238896482

GI number: 238896482

Start: 4463327

End: 4464028

Strand: Direct

Name: yggS [H]

Synonym: KP1_4661

Alternate gene names: 238896482

Gene position: 4463327-4464028 (Clockwise)

Preceding gene: 238896479

Following gene: 238896483

Centisome position: 85.04

GC content: 57.55

Gene sequence:

>702_bases
ATGAACGATATTGCGCATAACCTGGCACAGGTCCGGGACAAAATCTCCGGTGCTGCCGCCCGATGCGGGCGTGCGCCAGA
AGAAGTGACATTGCTTGCAGTGAGTAAAACGAAACCTGCGAGCGCGATCGAAGAAGCCATTGCGGCAGGCCAGCGGGCAT
TTGGTGAAAACTACGTCCAGGAGGGCGTGGAGAAGATTAACCATTTCCAGCAGGCTGGCGTCAGCGGGCTGCAGTGGCAC
TTTATTGGCCCCCTGCAGTCCAACAAAAGCCGGTTGGTGGCAGAGCATTTTGACTGGTGCCACACCGTCGATCGGCTGAA
AATCGCCACCCGCCTGAACGAGCAGCGCCCGGCGCATTTGCCGCCGCTGAAGGTGCTGATTCAAATTAACATCAGCGATG
AACAGAGCAAATCCGGCATCCCGCTGGAAGCGCTCGACGGCTTAGCGGCGGAGATCGCTGAGTTACCTCATCTGGAACTG
CGCGGCCTGATGGCCATTCCCGCGCCTGAGTCAGAATATGTAAGGCAGTTTGCCGTCGCCCGGCAAATGGCGGTAGCATT
TGCGCGATTAAAAACGCGGTACCCCACGGTCGATACGTTGTCTCTGGGAATGTCGGACGATATGGAAGCCGCAATCGCGG
CGGGAAGCACGATGGTGCGCATCGGTACTGCCATTTTTGGTGCGCGCGACTACAGCAAATAA

Upstream 100 bases:

>100_bases
CCAGCGCGGTGCGGCGGAATTGCACAGGTGTAGATCGGAGACATTATGCTTTACACTAAGGGCTACGATTTCTTCCAGCT
TCATAACTCATCCTCGGAAT

Downstream 100 bases:

>100_bases
TAAGGAATCTGAGGAACGCCATGAAGACGTTGACTTTCCTGCTTTCAACGGTCATTGAGCTTTACACGATGGTCGTGTTG
TTACGCGTCTGGATGCAGTG

Product: putative enzyme with PLP-binding domain

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 233; Mature: 233

Protein sequence:

>233_residues
MNDIAHNLAQVRDKISGAAARCGRAPEEVTLLAVSKTKPASAIEEAIAAGQRAFGENYVQEGVEKINHFQQAGVSGLQWH
FIGPLQSNKSRLVAEHFDWCHTVDRLKIATRLNEQRPAHLPPLKVLIQINISDEQSKSGIPLEALDGLAAEIAELPHLEL
RGLMAIPAPESEYVRQFAVARQMAVAFARLKTRYPTVDTLSLGMSDDMEAAIAAGSTMVRIGTAIFGARDYSK

Sequences:

>Translated_233_residues
MNDIAHNLAQVRDKISGAAARCGRAPEEVTLLAVSKTKPASAIEEAIAAGQRAFGENYVQEGVEKINHFQQAGVSGLQWH
FIGPLQSNKSRLVAEHFDWCHTVDRLKIATRLNEQRPAHLPPLKVLIQINISDEQSKSGIPLEALDGLAAEIAELPHLEL
RGLMAIPAPESEYVRQFAVARQMAVAFARLKTRYPTVDTLSLGMSDDMEAAIAAGSTMVRIGTAIFGARDYSK
>Mature_233_residues
MNDIAHNLAQVRDKISGAAARCGRAPEEVTLLAVSKTKPASAIEEAIAAGQRAFGENYVQEGVEKINHFQQAGVSGLQWH
FIGPLQSNKSRLVAEHFDWCHTVDRLKIATRLNEQRPAHLPPLKVLIQINISDEQSKSGIPLEALDGLAAEIAELPHLEL
RGLMAIPAPESEYVRQFAVARQMAVAFARLKTRYPTVDTLSLGMSDDMEAAIAAGSTMVRIGTAIFGARDYSK

Specific function: Unknown

COG id: COG0325

COG function: function code R; Predicted enzyme with a TIM-barrel fold

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0001 family [H]

Homologues:

Organism=Homo sapiens, GI6005842, Length=242, Percent_Identity=38.8429752066116, Blast_Score=131, Evalue=6e-31,
Organism=Escherichia coli, GI1789321, Length=233, Percent_Identity=86.6952789699571, Blast_Score=420, Evalue=1e-119,
Organism=Caenorhabditis elegans, GI17533025, Length=223, Percent_Identity=36.322869955157, Blast_Score=118, Evalue=3e-27,
Organism=Saccharomyces cerevisiae, GI6319435, Length=217, Percent_Identity=38.7096774193548, Blast_Score=123, Evalue=3e-29,
Organism=Drosophila melanogaster, GI45550861, Length=225, Percent_Identity=42.2222222222222, Blast_Score=136, Evalue=1e-32,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001608
- InterPro:   IPR011078 [H]

Pfam domain/function: PF01168 Ala_racemase_N [H]

EC number: NA

Molecular weight: Translated: 25378; Mature: 25378

Theoretical pI: Translated: 6.89; Mature: 6.89

Prosite motif: PS01211 UPF0001

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNDIAHNLAQVRDKISGAAARCGRAPEEVTLLAVSKTKPASAIEEAIAAGQRAFGENYVQ
CCHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHH
EGVEKINHFQQAGVSGLQWHFIGPLQSNKSRLVAEHFDWCHTVDRLKIATRLNEQRPAHL
HHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
PPLKVLIQINISDEQSKSGIPLEALDGLAAEIAELPHLELRGLMAIPAPESEYVRQFAVA
CCEEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHCCCHHHCCEEECCCCCHHHHHHHHHH
RQMAVAFARLKTRYPTVDTLSLGMSDDMEAAIAAGSTMVRIGTAIFGARDYSK
HHHHHHHHHHHHCCCCHHHEECCCCCCHHHHHHCCCHHHHHHHHHHCCCCCCC
>Mature Secondary Structure
MNDIAHNLAQVRDKISGAAARCGRAPEEVTLLAVSKTKPASAIEEAIAAGQRAFGENYVQ
CCHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHH
EGVEKINHFQQAGVSGLQWHFIGPLQSNKSRLVAEHFDWCHTVDRLKIATRLNEQRPAHL
HHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
PPLKVLIQINISDEQSKSGIPLEALDGLAAEIAELPHLELRGLMAIPAPESEYVRQFAVA
CCEEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHCCCHHHCCEEECCCCCHHHHHHHHHH
RQMAVAFARLKTRYPTVDTLSLGMSDDMEAAIAAGSTMVRIGTAIFGARDYSK
HHHHHHHHHHHHCCCCHHHEECCCCCCHHHHHHCCCHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]