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The map label for this gene is yqgF [C]

Identifier: 238896479

GI number: 238896479

Start: 4460859

End: 4461275

Strand: Direct

Name: yqgF [C]

Synonym: KP1_4658

Alternate gene names: 238896479

Gene position: 4460859-4461275 (Clockwise)

Preceding gene: 238896478

Following gene: 238896482

Centisome position: 84.99

GC content: 58.27

Gene sequence:

>417_bases
ATGAGCGGAACCTTTCTCGGCTTTGACTTTGGCACCAAAAGCATCGGCGTGGCGGTGGGACAACGCATCACCGCGACCGC
ACGACCATTACCGGCGCTGAAGGCGCAGGACGGTAAACCGGACTGGAACGTCATCGAAAAACTGCTTAAAGAGTGGCAGC
CTGAGGCGGTAATCGTCGGCCTGCCGCTCAATATGGACGGCACCGAGCAACCGCTGACGGCGCGCGCGCGTAATTTCGCC
AATAAAATTCATGGCCGCTTTGGCGTCGCGATCCTTCTCCACGATGAACGGCTGAGTACGGTTGAGGCCCGCGCGGGCCT
GTTTGAACACGGCGGCTACCGGGCGCTGAATAAAGGCAGCGTCGATTCAGCCTCTGCCGTAGTCATACTGGAAAGCTACT
TCGAGCAGAGCTTTTAA

Upstream 100 bases:

>100_bases
ATATTCTTTTCCGTACGCCGATCGCCGATCGCTGGCGCGAGGCGGCTAAACTGATTGGTATCGACATTGTGACGATGCCA
GGCGTCGCGGGGCATGCGTG

Downstream 100 bases:

>100_bases
ACTCTGCCCTCCTGCGCCGCCGGCGGACCGCTGACGGCGCACGTTTACCCGCTTAGTGGCGCAGATGTTCGTTAGCCCAG
CTCACCGCCTGGGTGCGATT

Product: Holliday junction resolvase-like protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 138; Mature: 137

Protein sequence:

>138_residues
MSGTFLGFDFGTKSIGVAVGQRITATARPLPALKAQDGKPDWNVIEKLLKEWQPEAVIVGLPLNMDGTEQPLTARARNFA
NKIHGRFGVAILLHDERLSTVEARAGLFEHGGYRALNKGSVDSASAVVILESYFEQSF

Sequences:

>Translated_138_residues
MSGTFLGFDFGTKSIGVAVGQRITATARPLPALKAQDGKPDWNVIEKLLKEWQPEAVIVGLPLNMDGTEQPLTARARNFA
NKIHGRFGVAILLHDERLSTVEARAGLFEHGGYRALNKGSVDSASAVVILESYFEQSF
>Mature_137_residues
SGTFLGFDFGTKSIGVAVGQRITATARPLPALKAQDGKPDWNVIEKLLKEWQPEAVIVGLPLNMDGTEQPLTARARNFAN
KIHGRFGVAILLHDERLSTVEARAGLFEHGGYRALNKGSVDSASAVVILESYFEQSF

Specific function: Could be a nuclease that resolves Holliday junction intermediates in genetic recombination [H]

COG id: COG0816

COG function: function code L; Predicted endonuclease involved in recombination (possible Holliday junction resolvase in Mycoplasmas and B. subtilis)

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the yqgF HJR family [H]

Homologues:

Organism=Escherichia coli, GI1789318, Length=138, Percent_Identity=84.7826086956522, Blast_Score=252, Evalue=7e-69,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005227
- InterPro:   IPR006641
- InterPro:   IPR012337 [H]

Pfam domain/function: PF03652 UPF0081 [H]

EC number: NA

Molecular weight: Translated: 14998; Mature: 14867

Theoretical pI: Translated: 7.78; Mature: 7.78

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
1.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.7 %Met     (Mature Protein)
0.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSGTFLGFDFGTKSIGVAVGQRITATARPLPALKAQDGKPDWNVIEKLLKEWQPEAVIVG
CCCCEEEECCCCCHHHHHHCCEEECCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEE
LPLNMDGTEQPLTARARNFANKIHGRFGVAILLHDERLSTVEARAGLFEHGGYRALNKGS
ECCCCCCCCCCHHHHHHHHHHHHCCCEEEEEEEECCCHHHHHHHHCHHHCCCEEECCCCC
VDSASAVVILESYFEQSF
CCCCHHHHHHHHHHHCCC
>Mature Secondary Structure 
SGTFLGFDFGTKSIGVAVGQRITATARPLPALKAQDGKPDWNVIEKLLKEWQPEAVIVG
CCCEEEECCCCCHHHHHHCCEEECCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEE
LPLNMDGTEQPLTARARNFANKIHGRFGVAILLHDERLSTVEARAGLFEHGGYRALNKGS
ECCCCCCCCCCHHHHHHHHHHHHCCCEEEEEEEECCCHHHHHHHHCHHHCCCEEECCCCC
VDSASAVVILESYFEQSF
CCCCHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA