Click here to switch to the map view.

The map label for this gene is fimF [H]

Identifier: 238896403

GI number: 238896403

Start: 4385218

End: 4385748

Strand: Direct

Name: fimF [H]

Synonym: KP1_4575

Alternate gene names: 238896403

Gene position: 4385218-4385748 (Clockwise)

Preceding gene: 238896402

Following gene: 238896404

Centisome position: 83.55

GC content: 61.21

Gene sequence:

>531_bases
ATGATGAGAACACTGCAGTATCTGCTGGGCGCCCTGTTCACCCTGGGCGCACCGGCTGCCTTTGCCGCCGATAGCACGAT
CACCATCAGCGGCTATGTCCGCGATAACGCCTGCGCGGTAGCCGGCGAATCGAAGGATTTTACTGTCGATTTACAGGATA
ACGCCGCGAAGCAGTTTTATGCCGTTGGGGCGACGACGCCGCCGGTGCCGTTCCGCATCGTGCTGTCGCCCTGCGGCACT
TCCGTCACCGCGGTGAAGGTCGGTTTCACCGGCGTGGCGGACAGCGTCAACACCAGCCTGTTAAAACTCGATGCCGGGAC
CTCGGCGGCGGCAGGAATGGGGGTGGAAATTCTCGATCAGCAGCAGTCCCGGCTGCCGGTCAATGCGCCGTCATCCACCA
TGACCTGGACCACGCTGACCCCGGGCCAGACCAATATTCTCAACTTTTACGCCCGGCTGATGGCCACTCAGGTGCCCGTC
ACCGCCGGGCATGTCAATGCGACAGCGACATTCACCCTGGAATTTCAGTAA

Upstream 100 bases:

>100_bases
GATGGCCCGGACGCTCAGTGCGTGGCCGATTACCGTCTGCCGCCGGAGAGCCAGCAGCAGGCGCTCAGTCAGCTTTCGGT
CGCGTGCCGCTAAGGAGATC

Downstream 100 bases:

>100_bases
GCGGAGGCTGAAATGAAATGGACTCATGTGGGCTGGCTGCTGGCCGGCCTGTTAACCGCGAGCGCTTCCCTGCGGGCGGC
CGACGTCACTCTCACCGTCA

Product: type 1 fimbrial minor component

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 176; Mature: 176

Protein sequence:

>176_residues
MMRTLQYLLGALFTLGAPAAFAADSTITISGYVRDNACAVAGESKDFTVDLQDNAAKQFYAVGATTPPVPFRIVLSPCGT
SVTAVKVGFTGVADSVNTSLLKLDAGTSAAAGMGVEILDQQQSRLPVNAPSSTMTWTTLTPGQTNILNFYARLMATQVPV
TAGHVNATATFTLEFQ

Sequences:

>Translated_176_residues
MMRTLQYLLGALFTLGAPAAFAADSTITISGYVRDNACAVAGESKDFTVDLQDNAAKQFYAVGATTPPVPFRIVLSPCGT
SVTAVKVGFTGVADSVNTSLLKLDAGTSAAAGMGVEILDQQQSRLPVNAPSSTMTWTTLTPGQTNILNFYARLMATQVPV
TAGHVNATATFTLEFQ
>Mature_176_residues
MMRTLQYLLGALFTLGAPAAFAADSTITISGYVRDNACAVAGESKDFTVDLQDNAAKQFYAVGATTPPVPFRIVLSPCGT
SVTAVKVGFTGVADSVNTSLLKLDAGTSAAAGMGVEILDQQQSRLPVNAPSSTMTWTTLTPGQTNILNFYARLMATQVPV
TAGHVNATATFTLEFQ

Specific function: Involved in regulation of length and mediation of adhesion of type 1 fimbriae (but not necessary for the production of fimbriae). Involved in the integration of fimH in the fimbriae [H]

COG id: COG3539

COG function: function code NU; P pilus assembly protein, pilin FimA

Gene ontology:

Cell location: Fimbrium [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the fimbrial protein family [H]

Homologues:

Organism=Escherichia coli, GI1790773, Length=170, Percent_Identity=69.4117647058823, Blast_Score=250, Evalue=4e-68,
Organism=Escherichia coli, GI1787781, Length=169, Percent_Identity=48.5207100591716, Blast_Score=162, Evalue=1e-41,
Organism=Escherichia coli, GI87081805, Length=174, Percent_Identity=37.3563218390805, Blast_Score=104, Evalue=4e-24,
Organism=Escherichia coli, GI87082421, Length=182, Percent_Identity=33.5164835164835, Blast_Score=92, Evalue=2e-20,
Organism=Escherichia coli, GI87081753, Length=164, Percent_Identity=35.9756097560976, Blast_Score=76, Evalue=1e-15,
Organism=Escherichia coli, GI1787174, Length=155, Percent_Identity=31.6129032258064, Blast_Score=60, Evalue=7e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008966
- InterPro:   IPR000259
- InterPro:   IPR014779 [H]

Pfam domain/function: PF00419 Fimbrial [H]

EC number: NA

Molecular weight: Translated: 18373; Mature: 18373

Theoretical pI: Translated: 4.97; Mature: 4.97

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMRTLQYLLGALFTLGAPAAFAADSTITISGYVRDNACAVAGESKDFTVDLQDNAAKQFY
CCHHHHHHHHHHHHCCCCCCCCCCCEEEEEEEEECCEEEEECCCCCEEEEECCCCCEEEE
AVGATTPPVPFRIVLSPCGTSVTAVKVGFTGVADSVNTSLLKLDAGTSAAAGMGVEILDQ
EECCCCCCCCEEEEEECCCCEEEEEEEECCCCCCCCCCEEEEEECCCCCCCCCCEEEECC
QQSRLPVNAPSSTMTWTTLTPGQTNILNFYARLMATQVPVTAGHVNATATFTLEFQ
HHHCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHCCCEEECCCCEEEEEEEEEC
>Mature Secondary Structure
MMRTLQYLLGALFTLGAPAAFAADSTITISGYVRDNACAVAGESKDFTVDLQDNAAKQFY
CCHHHHHHHHHHHHCCCCCCCCCCCEEEEEEEEECCEEEEECCCCCEEEEECCCCCEEEE
AVGATTPPVPFRIVLSPCGTSVTAVKVGFTGVADSVNTSLLKLDAGTSAAAGMGVEILDQ
EECCCCCCCCEEEEEECCCCEEEEEEEECCCCCCCCCCEEEEEECCCCCCCCCCEEEECC
QQSRLPVNAPSSTMTWTTLTPGQTNILNFYARLMATQVPVTAGHVNATATFTLEFQ
HHHCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHCCCEEECCCCEEEEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 2890081; 7610040; 9278503; 1970114 [H]