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The map label for this gene is fimD [H]

Identifier: 238896402

GI number: 238896402

Start: 4382565

End: 4385210

Strand: Direct

Name: fimD [H]

Synonym: KP1_4574

Alternate gene names: 238896402

Gene position: 4382565-4385210 (Clockwise)

Preceding gene: 238896401

Following gene: 238896403

Centisome position: 83.5

GC content: 61.9

Gene sequence:

>2646_bases
ATGACAGCCGGGCAACGTCGGACCGGAGGGATAATGTCACATCGGAAATATGGACTGGATCATTTAGGTTGCCGAACTGC
CCGGCGCCTGGTATCTCCGGCGCTGGCGCTGTGGCTCTGCTCACAGCCGTTTGCCGCGCGGGCGGACCTCTATTTTAACC
CCCGCTTTTTAGCTGACGATCCGGCGGCGGTGGCTGACCTGTCGGGATTTGAAAAAGGCCAGGAGGTTCCGCCAGGCACC
TATCGCGTCGATATTTATCTCAACAATGGTTTTATGACCACCCGGGACGTCACTTTCCAGGCCGATGCCCAGGGTCACGG
TCTGTCACCCTGCCTGACGCGCGGCCAGCTGGCGAGCATGGGTGTGGATACCGGTCGGGTGCCGGGCATGGCAACGCTGG
ACAGCACGGCCTGCGTGCCGCTGACCACGCTTATCAGCGAAGCTACCACGCGCTTCGACGTCGGGCAGCAACGCCTGTAC
CTCACCGTCCCCCAGGCATTTATGGGTAACCATGCGCGCGGCTATATTCCGCCGGAGCTGTGGGATAACGGTATCACCGC
CGGGCTGATTAACTATAACTTCACGGGCAATAACGCCCATAACACCACAGGTGGCAGCAGCCGTTACGCCTATCTGAATC
TACAGAGCGGCCTGAACATTGGCGCCTGGCGTCTGCGCGATAACAGCACCTGGAGCTACAGCAGCGGCGGTAGCACCTCA
TCCAACGAGAATCGCTGGCAGCACGTTAACAGCTGGCTTGAGCGGGACATCACGCCTCTGCGTTCGCGACTCACCCTAGG
GGACAGCTACACCAACGGCGATGTCTTCGACGGGATCAACTTCCGCGGCGCCCAGCTGGCCTCCGACGACAATATGCTAC
CGGACAGCCAGAAAGGCTTTGCGCCGGTGATCCACGGGATCGCCCGCGGCACGGCGCAGGTGTCAATCAGGCAAAACGGC
TACGAAATCTACCAGAGCACAGTGCCGCCGGGACCATTTACCATCGACGATCTCTACGCCGCGGGCAATGGCGGCGATCT
GCAGGTCACGATCAAAGAAGCGGATGGCTCCCGCCAGGTCTTCAGCGTGCCCTGGTCAACGGTGCCGGTTCTCCAGCGTG
AAGGCCATACCCGCTTCGCCCTCACCGCCGGGGAGTACCGCAGCGGCAACAGTCAGCAGGAAACGCCCGATTTTTTCCAG
GGCACGGCCATGCATGGCCTGCCGGCAGGCTGGACGCTCTACGGCGGCACCCAGCTGGCAGACCGCTATCGCGCCTTTAA
CCTTGGGGTGGGGAAAAACATGGGCTATTTCGGCGCCCTGTCGCTGGATATCACTCAGGCCAACGCCACCCTGGCTGACG
ACAGCGAACATCAGGGGCAGTCGGTGCGTTTTCTCTATAACAAATCCCTGGATGAGACCGGCACCAACCTGCAGCTGGTG
GGCTACCGCTACTCTACCCGCGGCTATTATAACTTTGCCGATACCACTTACCGCCGGATGAGCGGCTACAGTGTGGAAAC
CCAGGACGGCGTTATCCAGGTAAAACCGAAATTTACCGACTACTACAATCTGGCTTACAGCAAGCGCGGCAAGGTGCAGC
TGAGCGTGACTCAGCAGTTGGGGCGCACCGCCACCCTCTATCTCAGCGGTAGCCACCAGACCTACTGGGGCACCGACGAT
GCCGATGAGCAGCTGCAGGCCGGCCTCAACGCCGCCGTGGACGATATCAACTGGTCGCTAAGCTACAGCCTGACAAAAAA
CGCCTGGCAGCAGGGGCGCGATCAAATGCTGGCGATCAATATCAATATCCCCTTCAGCCACTGGCTGCGTTCCGACAGCC
GCTCGGTCTGGCGGCACGCCAGCGCCAGCTACAGCCTGTCGCACGATCTCAATGGCCGCATGACCAATCTGGCGGGCCTG
TACGGCACCCTGCTGGAAGACAACAACCTCAGCTATAGCGTGCAGACCGGCTATGCCGGCGGCGGCAACGGCGACAACGG
GAGCACAGGCTACACCGCCCTCAACTACCGCGGCGGCTACGGCAACGCCAACGTCGGCTACAGCCGCAGCGATGGCTTTA
AACAGCTCTACTACGGGGTCAGCGGCGGCGTGCTGGCGCACGCCAACGGCATCACCCTGAGCCAACCGTTAAACGATACC
GTGGTGCTGGTGAAAGCCCCCGGCGCCGGCGGCGTGAAAGTGGAAAACCAGACCGGGGTACGCACCGACTGGCGCGGGTA
TGCCGTCCTGCCTTATGCCACTGAGTATCGCGAAAACCGGATCGCGCTGGATACCAACACCCTGGCGGACAATGTCGACC
TTGACGATGCGGTGGTCAGCGTGGTGCCCACCCATGGGGCGATTGTCCGCGCCAACTTCAACGCCCAGGTAGGGATGAAG
ATCCTGATGACGCTGACCCATCGCGGCAAACCGGTGCCGTTTGGCGCCCTCGCCACCGGCGACAGCAACCAGAGCGGCAG
CATCGTCGCGGACAACGGCCAGGTCTACCTGAGCGGGATGCCGCTGGCGGGCAAAGTGCGGGTGAAATGGGGCGATGGCC
CGGACGCTCAGTGCGTGGCCGATTACCGTCTGCCGCCGGAGAGCCAGCAGCAGGCGCTCAGTCAGCTTTCGGTCGCGTGC
CGCTAA

Upstream 100 bases:

>100_bases
GATTAATGATTACGGCGCGCTGACGCCGAAAATGAATGGCGTGCTGCGCTAACCCAGAAGCGCCCCGCCGCGCGGGACAC
GCTGCGCATGACCAGAAGCA

Downstream 100 bases:

>100_bases
GGAGATCATGATGAGAACACTGCAGTATCTGCTGGGCGCCCTGTTCACCCTGGGCGCACCGGCTGCCTTTGCCGCCGATA
GCACGATCACCATCAGCGGC

Product: outer membrane protein for export and assembly of type 1 fimbriae

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 881; Mature: 880

Protein sequence:

>881_residues
MTAGQRRTGGIMSHRKYGLDHLGCRTARRLVSPALALWLCSQPFAARADLYFNPRFLADDPAAVADLSGFEKGQEVPPGT
YRVDIYLNNGFMTTRDVTFQADAQGHGLSPCLTRGQLASMGVDTGRVPGMATLDSTACVPLTTLISEATTRFDVGQQRLY
LTVPQAFMGNHARGYIPPELWDNGITAGLINYNFTGNNAHNTTGGSSRYAYLNLQSGLNIGAWRLRDNSTWSYSSGGSTS
SNENRWQHVNSWLERDITPLRSRLTLGDSYTNGDVFDGINFRGAQLASDDNMLPDSQKGFAPVIHGIARGTAQVSIRQNG
YEIYQSTVPPGPFTIDDLYAAGNGGDLQVTIKEADGSRQVFSVPWSTVPVLQREGHTRFALTAGEYRSGNSQQETPDFFQ
GTAMHGLPAGWTLYGGTQLADRYRAFNLGVGKNMGYFGALSLDITQANATLADDSEHQGQSVRFLYNKSLDETGTNLQLV
GYRYSTRGYYNFADTTYRRMSGYSVETQDGVIQVKPKFTDYYNLAYSKRGKVQLSVTQQLGRTATLYLSGSHQTYWGTDD
ADEQLQAGLNAAVDDINWSLSYSLTKNAWQQGRDQMLAININIPFSHWLRSDSRSVWRHASASYSLSHDLNGRMTNLAGL
YGTLLEDNNLSYSVQTGYAGGGNGDNGSTGYTALNYRGGYGNANVGYSRSDGFKQLYYGVSGGVLAHANGITLSQPLNDT
VVLVKAPGAGGVKVENQTGVRTDWRGYAVLPYATEYRENRIALDTNTLADNVDLDDAVVSVVPTHGAIVRANFNAQVGMK
ILMTLTHRGKPVPFGALATGDSNQSGSIVADNGQVYLSGMPLAGKVRVKWGDGPDAQCVADYRLPPESQQQALSQLSVAC
R

Sequences:

>Translated_881_residues
MTAGQRRTGGIMSHRKYGLDHLGCRTARRLVSPALALWLCSQPFAARADLYFNPRFLADDPAAVADLSGFEKGQEVPPGT
YRVDIYLNNGFMTTRDVTFQADAQGHGLSPCLTRGQLASMGVDTGRVPGMATLDSTACVPLTTLISEATTRFDVGQQRLY
LTVPQAFMGNHARGYIPPELWDNGITAGLINYNFTGNNAHNTTGGSSRYAYLNLQSGLNIGAWRLRDNSTWSYSSGGSTS
SNENRWQHVNSWLERDITPLRSRLTLGDSYTNGDVFDGINFRGAQLASDDNMLPDSQKGFAPVIHGIARGTAQVSIRQNG
YEIYQSTVPPGPFTIDDLYAAGNGGDLQVTIKEADGSRQVFSVPWSTVPVLQREGHTRFALTAGEYRSGNSQQETPDFFQ
GTAMHGLPAGWTLYGGTQLADRYRAFNLGVGKNMGYFGALSLDITQANATLADDSEHQGQSVRFLYNKSLDETGTNLQLV
GYRYSTRGYYNFADTTYRRMSGYSVETQDGVIQVKPKFTDYYNLAYSKRGKVQLSVTQQLGRTATLYLSGSHQTYWGTDD
ADEQLQAGLNAAVDDINWSLSYSLTKNAWQQGRDQMLAININIPFSHWLRSDSRSVWRHASASYSLSHDLNGRMTNLAGL
YGTLLEDNNLSYSVQTGYAGGGNGDNGSTGYTALNYRGGYGNANVGYSRSDGFKQLYYGVSGGVLAHANGITLSQPLNDT
VVLVKAPGAGGVKVENQTGVRTDWRGYAVLPYATEYRENRIALDTNTLADNVDLDDAVVSVVPTHGAIVRANFNAQVGMK
ILMTLTHRGKPVPFGALATGDSNQSGSIVADNGQVYLSGMPLAGKVRVKWGDGPDAQCVADYRLPPESQQQALSQLSVAC
R
>Mature_880_residues
TAGQRRTGGIMSHRKYGLDHLGCRTARRLVSPALALWLCSQPFAARADLYFNPRFLADDPAAVADLSGFEKGQEVPPGTY
RVDIYLNNGFMTTRDVTFQADAQGHGLSPCLTRGQLASMGVDTGRVPGMATLDSTACVPLTTLISEATTRFDVGQQRLYL
TVPQAFMGNHARGYIPPELWDNGITAGLINYNFTGNNAHNTTGGSSRYAYLNLQSGLNIGAWRLRDNSTWSYSSGGSTSS
NENRWQHVNSWLERDITPLRSRLTLGDSYTNGDVFDGINFRGAQLASDDNMLPDSQKGFAPVIHGIARGTAQVSIRQNGY
EIYQSTVPPGPFTIDDLYAAGNGGDLQVTIKEADGSRQVFSVPWSTVPVLQREGHTRFALTAGEYRSGNSQQETPDFFQG
TAMHGLPAGWTLYGGTQLADRYRAFNLGVGKNMGYFGALSLDITQANATLADDSEHQGQSVRFLYNKSLDETGTNLQLVG
YRYSTRGYYNFADTTYRRMSGYSVETQDGVIQVKPKFTDYYNLAYSKRGKVQLSVTQQLGRTATLYLSGSHQTYWGTDDA
DEQLQAGLNAAVDDINWSLSYSLTKNAWQQGRDQMLAININIPFSHWLRSDSRSVWRHASASYSLSHDLNGRMTNLAGLY
GTLLEDNNLSYSVQTGYAGGGNGDNGSTGYTALNYRGGYGNANVGYSRSDGFKQLYYGVSGGVLAHANGITLSQPLNDTV
VLVKAPGAGGVKVENQTGVRTDWRGYAVLPYATEYRENRIALDTNTLADNVDLDDAVVSVVPTHGAIVRANFNAQVGMKI
LMTLTHRGKPVPFGALATGDSNQSGSIVADNGQVYLSGMPLAGKVRVKWGDGPDAQCVADYRLPPESQQQALSQLSVACR

Specific function: Involved in the export and assembly of fimA fimbrial subunits across the outer membrane [H]

COG id: COG3188

COG function: function code NU; P pilus assembly protein, porin PapC

Gene ontology:

Cell location: Cell outer membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the fimbrial export usher family [H]

Homologues:

Organism=Escherichia coli, GI1790772, Length=857, Percent_Identity=77.7129521586931, Blast_Score=1413, Evalue=0.0,
Organism=Escherichia coli, GI1787172, Length=851, Percent_Identity=48.7661574618096, Blast_Score=813, Evalue=0.0,
Organism=Escherichia coli, GI1786744, Length=844, Percent_Identity=47.6303317535545, Blast_Score=798, Evalue=0.0,
Organism=Escherichia coli, GI1789533, Length=850, Percent_Identity=38.1176470588235, Blast_Score=559, Evalue=1e-160,
Organism=Escherichia coli, GI1786332, Length=874, Percent_Identity=32.837528604119, Blast_Score=416, Evalue=1e-117,
Organism=Escherichia coli, GI1788427, Length=824, Percent_Identity=29.3689320388349, Blast_Score=334, Evalue=2e-92,
Organism=Escherichia coli, GI87081778, Length=845, Percent_Identity=28.1656804733728, Blast_Score=273, Evalue=3e-74,
Organism=Escherichia coli, GI1789610, Length=682, Percent_Identity=25.8064516129032, Blast_Score=130, Evalue=4e-31,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000015
- InterPro:   IPR018030 [H]

Pfam domain/function: PF00577 Usher [H]

EC number: NA

Molecular weight: Translated: 95806; Mature: 95675

Theoretical pI: Translated: 6.99; Mature: 6.99

Prosite motif: PS01151 FIMBRIAL_USHER

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTAGQRRTGGIMSHRKYGLDHLGCRTARRLVSPALALWLCSQPFAARADLYFNPRFLADD
CCCCCCCCCCCHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEECCEEECCC
PAAVADLSGFEKGQEVPPGTYRVDIYLNNGFMTTRDVTFQADAQGHGLSPCLTRGQLASM
CCHHHHCCCCCCCCCCCCCEEEEEEEECCCEEEEEEEEEEECCCCCCCCHHHCCCCHHHC
GVDTGRVPGMATLDSTACVPLTTLISEATTRFDVGQQRLYLTVPQAFMGNHARGYIPPEL
CCCCCCCCCEEEECCCCCHHHHHHHHHHHHHCCCCCCEEEEEECHHHHCCCCCCCCCHHH
WDNGITAGLINYNFTGNNAHNTTGGSSRYAYLNLQSGLNIGAWRLRDNSTWSYSSGGSTS
HCCCCEEEEEEEEECCCCCCCCCCCCCEEEEEEECCCCCEEEEEEECCCCEEECCCCCCC
SNENRWQHVNSWLERDITPLRSRLTLGDSYTNGDVFDGINFRGAQLASDDNMLPDSQKGF
CCCHHHHHHHHHHHHCHHHHHHHEEECCCCCCCCEECCCCCCCCEECCCCCCCCCCCCCH
APVIHGIARGTAQVSIRQNGYEIYQSTVPPGPFTIDDLYAAGNGGDLQVTIKEADGSRQV
HHHHHHHHCCCEEEEEECCCEEEEECCCCCCCCCHHHEEECCCCCEEEEEEEECCCCCEE
FSVPWSTVPVLQREGHTRFALTAGEYRSGNSQQETPDFFQGTAMHGLPAGWTLYGGTQLA
EECCCCCCCHHHCCCCEEEEEEECCCCCCCCCCCCCHHHCCCCCCCCCCCEEEECCHHHH
DRYRAFNLGVGKNMGYFGALSLDITQANATLADDSEHQGQSVRFLYNKSLDETGTNLQLV
HHHEEEECCCCCCCCEEEEEEEEEEECCCEECCCCCCCCCEEEEEEECCCCCCCCCEEEE
GYRYSTRGYYNFADTTYRRMSGYSVETQDGVIQVKPKFTDYYNLAYSKRGKVQLSVTQQL
EEEEECCCEEECCHHHHHHHCCCEEECCCCEEEECCCCCCEEEEEECCCCCEEEEEHHHH
GRTATLYLSGSHQTYWGTDDADEQLQAGLNAAVDDINWSLSYSLTKNAWQQGRDQMLAIN
CCEEEEEEECCCCEECCCCCHHHHHHHCCHHHHHCCCEEEEEEEHHHHHHCCCCCEEEEE
INIPFSHWLRSDSRSVWRHASASYSLSHDLNGRMTNLAGLYGTLLEDNNLSYSVQTGYAG
EECCHHHHHCCCCHHHHHHCCCCEEECCCCCCCCHHHHHHEEEEEECCCCEEEEEECCCC
GGNGDNGSTGYTALNYRGGYGNANVGYSRSDGFKQLYYGVSGGVLAHANGITLSQPLNDT
CCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCHHHHHCCCCCCEEEECCCEEECCCCCCE
VVLVKAPGAGGVKVENQTGVRTDWRGYAVLPYATEYRENRIALDTNTLADNVDLDDAVVS
EEEEECCCCCCEEEECCCCCCCCCCCEEEEEEHHHHCCCEEEEECCCCCCCCCCCCEEEE
VVPTHGAIVRANFNAQVGMKILMTLTHRGKPVPFGALATGDSNQSGSIVADNGQVYLSGM
EECCCCEEEEECCCCHHCCEEEEEECCCCCCCCCCEEECCCCCCCCCEEECCCEEEEECC
PLAGKVRVKWGDGPDAQCVADYRLPPESQQQALSQLSVACR
CCCCEEEEEECCCCCCEEEEECCCCCHHHHHHHHHHHHHCC
>Mature Secondary Structure 
TAGQRRTGGIMSHRKYGLDHLGCRTARRLVSPALALWLCSQPFAARADLYFNPRFLADD
CCCCCCCCCCHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEECCEEECCC
PAAVADLSGFEKGQEVPPGTYRVDIYLNNGFMTTRDVTFQADAQGHGLSPCLTRGQLASM
CCHHHHCCCCCCCCCCCCCEEEEEEEECCCEEEEEEEEEEECCCCCCCCHHHCCCCHHHC
GVDTGRVPGMATLDSTACVPLTTLISEATTRFDVGQQRLYLTVPQAFMGNHARGYIPPEL
CCCCCCCCCEEEECCCCCHHHHHHHHHHHHHCCCCCCEEEEEECHHHHCCCCCCCCCHHH
WDNGITAGLINYNFTGNNAHNTTGGSSRYAYLNLQSGLNIGAWRLRDNSTWSYSSGGSTS
HCCCCEEEEEEEEECCCCCCCCCCCCCEEEEEEECCCCCEEEEEEECCCCEEECCCCCCC
SNENRWQHVNSWLERDITPLRSRLTLGDSYTNGDVFDGINFRGAQLASDDNMLPDSQKGF
CCCHHHHHHHHHHHHCHHHHHHHEEECCCCCCCCEECCCCCCCCEECCCCCCCCCCCCCH
APVIHGIARGTAQVSIRQNGYEIYQSTVPPGPFTIDDLYAAGNGGDLQVTIKEADGSRQV
HHHHHHHHCCCEEEEEECCCEEEEECCCCCCCCCHHHEEECCCCCEEEEEEEECCCCCEE
FSVPWSTVPVLQREGHTRFALTAGEYRSGNSQQETPDFFQGTAMHGLPAGWTLYGGTQLA
EECCCCCCCHHHCCCCEEEEEEECCCCCCCCCCCCCHHHCCCCCCCCCCCEEEECCHHHH
DRYRAFNLGVGKNMGYFGALSLDITQANATLADDSEHQGQSVRFLYNKSLDETGTNLQLV
HHHEEEECCCCCCCCEEEEEEEEEEECCCEECCCCCCCCCEEEEEEECCCCCCCCCEEEE
GYRYSTRGYYNFADTTYRRMSGYSVETQDGVIQVKPKFTDYYNLAYSKRGKVQLSVTQQL
EEEEECCCEEECCHHHHHHHCCCEEECCCCEEEECCCCCCEEEEEECCCCCEEEEEHHHH
GRTATLYLSGSHQTYWGTDDADEQLQAGLNAAVDDINWSLSYSLTKNAWQQGRDQMLAIN
CCEEEEEEECCCCEECCCCCHHHHHHHCCHHHHHCCCEEEEEEEHHHHHHCCCCCEEEEE
INIPFSHWLRSDSRSVWRHASASYSLSHDLNGRMTNLAGLYGTLLEDNNLSYSVQTGYAG
EECCHHHHHCCCCHHHHHHCCCCEEECCCCCCCCHHHHHHEEEEEECCCCEEEEEECCCC
GGNGDNGSTGYTALNYRGGYGNANVGYSRSDGFKQLYYGVSGGVLAHANGITLSQPLNDT
CCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCHHHHHCCCCCCEEEECCCEEECCCCCCE
VVLVKAPGAGGVKVENQTGVRTDWRGYAVLPYATEYRENRIALDTNTLADNVDLDDAVVS
EEEEECCCCCCEEEECCCCCCCCCCCEEEEEEHHHHCCCEEEEECCCCCCCCCCCCEEEE
VVPTHGAIVRANFNAQVGMKILMTLTHRGKPVPFGALATGDSNQSGSIVADNGQVYLSGM
EECCCCEEEEECCCCHHCCEEEEEECCCCCCCCCCEEECCCCCCCCCEEECCCEEEEECC
PLAGKVRVKWGDGPDAQCVADYRLPPESQQQALSQLSVACR
CCCCEEEEEECCCCCCEEEEECCCCCHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 1970114; 7610040; 9278503 [H]