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The map label for this gene is pecS [H]

Identifier: 238896394

GI number: 238896394

Start: 4375765

End: 4376271

Strand: Direct

Name: pecS [H]

Synonym: KP1_4565

Alternate gene names: 238896394

Gene position: 4375765-4376271 (Clockwise)

Preceding gene: 238896392

Following gene: 238896396

Centisome position: 83.37

GC content: 63.31

Gene sequence:

>507_bases
ATGGACAAATCACCGCCGATCGACGCCGTGGATCGCATCCTCGCCCAGTGGCAGCGGGAGCGGCCAGACCTCGACTGCAG
CCCCATGGGGCCGATAGGTCGCCTGAAACGATGCGCTATGCTGCTGGAGCCGCAGGTGGAAGTGGCCTTTACGCGCCACG
ATCTGGTGCGCTGGGAGTTTGACATGCTGGCGACGCTGCGGCGCGCCGGGGCGCCTTTCGTACTTTCGCCCACCCAGCTC
TTCTCCACGCTGATGATTACCTCCGGCACCATGACCCATCGTCTGAAGGCGCTGGAGAAACGCGGGTTTATTACCCGCCT
GCCCAATCCGGAGGATGCCCGCAGTATGCTGGTCGCCCTGACTTCCGCCGGACGCGAACGGATCGATGCCGCAGTGGAAA
CCCACGTCGACAACGAACGGCAACTGCTGGCAGGACTCAGTGACGGTGAACGCCAGCAGTTGGATCAGGCGCTGCGGGTG
TTGATGCGACTGCTGGAAACGGGCTAA

Upstream 100 bases:

>100_bases
TACGTGAGAGAAAAGCCATGATTTTATCTTCACTTCAAGGTAAATTAGTGAGTGAAGTATGTACCGCCAAGTATCTTGAT
ATCAAGACAAGTGAGCACTA

Downstream 100 bases:

>100_bases
CAGCCAGCGGCGATAAAGTCGCCGTTGGCGCTGATCGGCACCACGCTGAAAAACAATCCCACGGCAAAGAGGATCAGCGC
CAGACCGCCGAGGATCTTCA

Product: putative MarR family regulatory protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 168; Mature: 168

Protein sequence:

>168_residues
MDKSPPIDAVDRILAQWQRERPDLDCSPMGPIGRLKRCAMLLEPQVEVAFTRHDLVRWEFDMLATLRRAGAPFVLSPTQL
FSTLMITSGTMTHRLKALEKRGFITRLPNPEDARSMLVALTSAGRERIDAAVETHVDNERQLLAGLSDGERQQLDQALRV
LMRLLETG

Sequences:

>Translated_168_residues
MDKSPPIDAVDRILAQWQRERPDLDCSPMGPIGRLKRCAMLLEPQVEVAFTRHDLVRWEFDMLATLRRAGAPFVLSPTQL
FSTLMITSGTMTHRLKALEKRGFITRLPNPEDARSMLVALTSAGRERIDAAVETHVDNERQLLAGLSDGERQQLDQALRV
LMRLLETG
>Mature_168_residues
MDKSPPIDAVDRILAQWQRERPDLDCSPMGPIGRLKRCAMLLEPQVEVAFTRHDLVRWEFDMLATLRRAGAPFVLSPTQL
FSTLMITSGTMTHRLKALEKRGFITRLPNPEDARSMLVALTSAGRERIDAAVETHVDNERQLLAGLSDGERQQLDQALRV
LMRLLETG

Specific function: Negative regulator of pectinase, cellulase, blue pigment production and virulence genes. Also binds to promoter sites in the pecS-pecM intergenic region and negatively autoregulate its expression as well as that of pecM [H]

COG id: COG1846

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH marR-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000835
- InterPro:   IPR023187
- InterPro:   IPR011991 [H]

Pfam domain/function: PF01047 MarR [H]

EC number: NA

Molecular weight: Translated: 18975; Mature: 18975

Theoretical pI: Translated: 7.53; Mature: 7.53

Prosite motif: PS50995 HTH_MARR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
4.8 %Met     (Translated Protein)
6.0 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
4.8 %Met     (Mature Protein)
6.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDKSPPIDAVDRILAQWQRERPDLDCSPMGPIGRLKRCAMLLEPQVEVAFTRHDLVRWEF
CCCCCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
DMLATLRRAGAPFVLSPTQLFSTLMITSGTMTHRLKALEKRGFITRLPNPEDARSMLVAL
HHHHHHHHCCCCEEECHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHH
TSAGRERIDAAVETHVDNERQLLAGLSDGERQQLDQALRVLMRLLETG
HHHHHHHHHHHHHHHCCCHHHHHHCCCCCHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MDKSPPIDAVDRILAQWQRERPDLDCSPMGPIGRLKRCAMLLEPQVEVAFTRHDLVRWEF
CCCCCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
DMLATLRRAGAPFVLSPTQLFSTLMITSGTMTHRLKALEKRGFITRLPNPEDARSMLVAL
HHHHHHHHCCCCEEECHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHH
TSAGRERIDAAVETHVDNERQLLAGLSDGERQQLDQALRVLMRLLETG
HHHHHHHHHHHHHHHCCCHHHHHHCCCCCHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8022282; 9194707 [H]