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The map label for this gene is uxuR [H]

Identifier: 238896357

GI number: 238896357

Start: 4336855

End: 4337628

Strand: Reverse

Name: uxuR [H]

Synonym: KP1_4521

Alternate gene names: 238896357

Gene position: 4337628-4336855 (Counterclockwise)

Preceding gene: 238896358

Following gene: 238896356

Centisome position: 82.64

GC content: 61.37

Gene sequence:

>774_bases
GTGGAAAAAGCGATAGTTCCGCCGGAAAAGAAGCCCTATCAGGAGATTGGTGATGACCTGCGCGCCCAGATCGCGCAGGG
GCGCTACCCGGTCGGGTCGCGTTTGCCGCCGGAACGCCATATTGCCGAAACCTATGGCGTCAGCCGGACCATCGTGCGCG
AAGCGCTGCTGATGCTGGAGCTGCAGGGGACGGTGGATATTCGTCAGGGATCCGGGGTGTATGTCATGCGCATTCCCCAC
GAGAACGACAGCGAAGAGGAGCAGCTGCTCAGCAGCGACGTCGGCCCGTTTGAAATTCTCCAGGCGCGCCAGCTGCTGGA
GAGCAACATCGCCGCCTTTGCCGCGAAAATGGCCACCCGCGCCGATATCGACAATCTGAAGCGGATTATTGAACAGGAGC
AGCGGGCAATCGCTCTCAACGACACCGCGCAGGATAACGCTCGTCTGTTCCATCTGGTGCTCGCCGGGGCGACGCAGAAC
CAGATGCTGTTGGCGACGGTAGAGCGGATCTGGCTGCAGATGGACAGCAGCCCGCTGTGGCAGCAGTTCAATGTGCATAT
TGCCAGCCGCGCCTGGCGGCTGAAATGGCTCGGCGACCGGCAGACCCTGCTCGCCGCGCTGCGGCGTCGCGATGTGATGG
GCGCCTGGCAGGCGATGTGGCAGCATCTGGAAAACGTCAAAAACAGCCTGCTGGAGCTGTCCGATGAGGACGCCCCCGAC
TTTGACGGCTATCTGTTCGACTCAGTGCCGATTTTTCAGGGGAAGCTGGTATGA

Upstream 100 bases:

>100_bases
CTGGTGCTGGATATCGATGATGAATACCGCTAGCCGGGGGCAATATTTGCTAAGATAGCGGCGTATTTGACTCGCAGGCA
TGTAACGCACAGGTGATTTT

Downstream 100 bases:

>100_bases
CGATCCTGCCGCTGTACGCTGCGCCGCAGTACGCCCCGCAGGTGACCGACTGGCTGTGGCAGGCCTTTGGCGGCGAGACG
CTGCCGCGGCAATTCTTCGC

Product: putative GntR-family regulatory protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 257; Mature: 257

Protein sequence:

>257_residues
MEKAIVPPEKKPYQEIGDDLRAQIAQGRYPVGSRLPPERHIAETYGVSRTIVREALLMLELQGTVDIRQGSGVYVMRIPH
ENDSEEEQLLSSDVGPFEILQARQLLESNIAAFAAKMATRADIDNLKRIIEQEQRAIALNDTAQDNARLFHLVLAGATQN
QMLLATVERIWLQMDSSPLWQQFNVHIASRAWRLKWLGDRQTLLAALRRRDVMGAWQAMWQHLENVKNSLLELSDEDAPD
FDGYLFDSVPIFQGKLV

Sequences:

>Translated_257_residues
MEKAIVPPEKKPYQEIGDDLRAQIAQGRYPVGSRLPPERHIAETYGVSRTIVREALLMLELQGTVDIRQGSGVYVMRIPH
ENDSEEEQLLSSDVGPFEILQARQLLESNIAAFAAKMATRADIDNLKRIIEQEQRAIALNDTAQDNARLFHLVLAGATQN
QMLLATVERIWLQMDSSPLWQQFNVHIASRAWRLKWLGDRQTLLAALRRRDVMGAWQAMWQHLENVKNSLLELSDEDAPD
FDGYLFDSVPIFQGKLV
>Mature_257_residues
MEKAIVPPEKKPYQEIGDDLRAQIAQGRYPVGSRLPPERHIAETYGVSRTIVREALLMLELQGTVDIRQGSGVYVMRIPH
ENDSEEEQLLSSDVGPFEILQARQLLESNIAAFAAKMATRADIDNLKRIIEQEQRAIALNDTAQDNARLFHLVLAGATQN
QMLLATVERIWLQMDSSPLWQQFNVHIASRAWRLKWLGDRQTLLAALRRRDVMGAWQAMWQHLENVKNSLLELSDEDAPD
FDGYLFDSVPIFQGKLV

Specific function: Repressor for the uxuRBA operon [H]

COG id: COG2186

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1790780, Length=245, Percent_Identity=46.530612244898, Blast_Score=219, Evalue=1e-58,
Organism=Escherichia coli, GI87082208, Length=249, Percent_Identity=43.7751004016064, Blast_Score=188, Evalue=2e-49,
Organism=Escherichia coli, GI1790032, Length=243, Percent_Identity=30.8641975308642, Blast_Score=75, Evalue=6e-15,
Organism=Escherichia coli, GI1789353, Length=240, Percent_Identity=29.5833333333333, Blast_Score=71, Evalue=9e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011711
- InterPro:   IPR000524
- InterPro:   IPR011991 [H]

Pfam domain/function: PF07729 FCD; PF00392 GntR [H]

EC number: NA

Molecular weight: Translated: 29270; Mature: 29270

Theoretical pI: Translated: 5.04; Mature: 5.04

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEKAIVPPEKKPYQEIGDDLRAQIAQGRYPVGSRLPPERHIAETYGVSRTIVREALLMLE
CCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCHHHHHHHHHHHHHH
LQGTVDIRQGSGVYVMRIPHENDSEEEQLLSSDVGPFEILQARQLLESNIAAFAAKMATR
CCCCEEEECCCCEEEEECCCCCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
ADIDNLKRIIEQEQRAIALNDTAQDNARLFHLVLAGATQNQMLLATVERIWLQMDSSPLW
CCHHHHHHHHHHHHHEEEECCCCCCCHHEEEEEEECCCCCHHHHHHHHHHHHHCCCCHHH
QQFNVHIASRAWRLKWLGDRQTLLAALRRRDVMGAWQAMWQHLENVKNSLLELSDEDAPD
HHHHHHHHHHEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
FDGYLFDSVPIFQGKLV
CCCEEECCCCCCCCCCC
>Mature Secondary Structure
MEKAIVPPEKKPYQEIGDDLRAQIAQGRYPVGSRLPPERHIAETYGVSRTIVREALLMLE
CCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCHHHHHHHHHHHHHH
LQGTVDIRQGSGVYVMRIPHENDSEEEQLLSSDVGPFEILQARQLLESNIAAFAAKMATR
CCCCEEEECCCCEEEEECCCCCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
ADIDNLKRIIEQEQRAIALNDTAQDNARLFHLVLAGATQNQMLLATVERIWLQMDSSPLW
CCHHHHHHHHHHHHHEEEECCCCCCCHHEEEEEEECCCCCHHHHHHHHHHHHHCCCCHHH
QQFNVHIASRAWRLKWLGDRQTLLAALRRRDVMGAWQAMWQHLENVKNSLLELSDEDAPD
HHHHHHHHHHEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
FDGYLFDSVPIFQGKLV
CCCEEECCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]