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The map label for this gene is ppdC [H]

Identifier: 238896338

GI number: 238896338

Start: 4320859

End: 4321182

Strand: Reverse

Name: ppdC [H]

Synonym: KP1_4501

Alternate gene names: 238896338

Gene position: 4321182-4320859 (Counterclockwise)

Preceding gene: 238896339

Following gene: 238896337

Centisome position: 82.33

GC content: 62.96

Gene sequence:

>324_bases
ATGTCAAATGCCCTGAAGCGTCAGCGGGGGTTTAGCCTGCCGGAGACCGTGCTGGCGATGGCGCTGATGGTGCTGACGGT
CACCGCGCTGGGCGGCTATCAGCGCGGAATGGCGCAAGGAATTGTCCAGTTGAACCAGACCCGTCAACTGTGGCGCGACG
CGTGGCGCTATAGCCAGCTCTCCGCGCCGCCGTCGCCGGCACGCGGGCAGGTAAGCCGTATGCAGACATCGAGGCAAAGA
TGTGTCAGCATCACGGTAACGATCAGTAGACCCGTTGCAAAGCGGGTGCAGATGACCCGGCTGCATTGCCCGGTCAGCCA
GTAG

Upstream 100 bases:

>100_bases
GCGAGGTGCAGGTCTGGCAGTCCGGCGAGGTGCGCGGCGGGCAGGTGCGTTTTTCCGCCCACGGCTGGAGCGATTTTTGC
CCGCTCAGGGAGGCGAGCTT

Downstream 100 bases:

>100_bases
TCAGGAGCAATTATGTTAAGGGTATACCACTCAAACCGGCTGGATGTTCTCGAGGCGTTGATGGAGTTTATCGTCGAGCG
CCAGCGGCTGGATGACCCTT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 107; Mature: 106

Protein sequence:

>107_residues
MSNALKRQRGFSLPETVLAMALMVLTVTALGGYQRGMAQGIVQLNQTRQLWRDAWRYSQLSAPPSPARGQVSRMQTSRQR
CVSITVTISRPVAKRVQMTRLHCPVSQ

Sequences:

>Translated_107_residues
MSNALKRQRGFSLPETVLAMALMVLTVTALGGYQRGMAQGIVQLNQTRQLWRDAWRYSQLSAPPSPARGQVSRMQTSRQR
CVSITVTISRPVAKRVQMTRLHCPVSQ
>Mature_106_residues
SNALKRQRGFSLPETVLAMALMVLTVTALGGYQRGMAQGIVQLNQTRQLWRDAWRYSQLSAPPSPARGQVSRMQTSRQRC
VSITVTISRPVAKRVQMTRLHCPVSQ

Specific function: Not yet known [H]

COG id: COG4967

COG function: function code NU; Tfp pilus assembly protein PilV

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1789187, Length=104, Percent_Identity=54.8076923076923, Blast_Score=115, Evalue=5e-28,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR022204
- InterPro:   IPR012902
- InterPro:   IPR001120 [H]

Pfam domain/function: PF12528 DUF3728 [H]

EC number: NA

Molecular weight: Translated: 11998; Mature: 11867

Theoretical pI: Translated: 12.44; Mature: 12.44

Prosite motif: PS00409 PROKAR_NTER_METHYL

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
5.6 %Met     (Translated Protein)
7.5 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
4.7 %Met     (Mature Protein)
6.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSNALKRQRGFSLPETVLAMALMVLTVTALGGYQRGMAQGIVQLNQTRQLWRDAWRYSQL
CCCHHHHHCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHC
SAPPSPARGQVSRMQTSRQRCVSITVTISRPVAKRVQMTRLHCPVSQ
CCCCCCCCHHHHHHHHHHHHHEEEEEEECCHHHHHHHHHHHCCCCCC
>Mature Secondary Structure 
SNALKRQRGFSLPETVLAMALMVLTVTALGGYQRGMAQGIVQLNQTRQLWRDAWRYSQL
CCHHHHHCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHC
SAPPSPARGQVSRMQTSRQRCVSITVTISRPVAKRVQMTRLHCPVSQ
CCCCCCCCHHHHHHHHHHHHHEEEEEEECCHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 3520484; 9278503; 7934814 [H]