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The map label for this gene is ygdK [H]

Identifier: 238896283

GI number: 238896283

Start: 4265951

End: 4266382

Strand: Direct

Name: ygdK [H]

Synonym: KP1_4442

Alternate gene names: 238896283

Gene position: 4265951-4266382 (Clockwise)

Preceding gene: 238896282

Following gene: 238896309

Centisome position: 81.28

GC content: 63.89

Gene sequence:

>432_bases
ATGACAACTCTGCACCCCTTCGGCACAACCATTACCGACGCTACGCTGCGCCAGATCTTCGCCCCGCTGAACCAGTGGGA
GGATAAATACCGTCAGCTGATTTTATTGGGCAAAAAGCTGCCGACGCTGACCGACGAGCGCAAAGCGCAGGCCCATGAGA
TTGCCGGCTGTGAGAACCGCGTCTGGCTGGGCTATGAGGAGGACGCCGAGGGCAGGCTGCACTTCTTTGGCGACAGCGAA
GGAAGGATTGTGCGCGGTCTGCTGGCGGTACTTTTAACCGCCGTGGAAGGAAAAACCCGCGCCGGGATCCTGGCGCAGGA
TCCGCTGGCGCTGTTCGACGAGCTGGGGCTGCGCGGCCAGCTCAGCGCCTCGCGCAGCCAGGGCCTCAGCGCCCTGAGCG
AGGCGGTGCTCGCCGCCGCCCGCGAAAGGTAA

Upstream 100 bases:

>100_bases
GCGGCACCCTGCGGGCCTCTTTCGCCCCCTACAATACCCAAGACGATGTTGCGGCGCTGGTCCACGCGGTGGATCGCGCC
CTGGAAATTCTGGTGGATTA

Downstream 100 bases:

>100_bases
TCTCACGATTTCGCTTTCCCGCCGCCGCGCCCGGTGGGCAAACTACTTTCCGGCAGCCGCAGCGTCACGCTGCGCTTTCG
CCAGCATCTTCTTCAGGGCA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 143; Mature: 142

Protein sequence:

>143_residues
MTTLHPFGTTITDATLRQIFAPLNQWEDKYRQLILLGKKLPTLTDERKAQAHEIAGCENRVWLGYEEDAEGRLHFFGDSE
GRIVRGLLAVLLTAVEGKTRAGILAQDPLALFDELGLRGQLSASRSQGLSALSEAVLAAARER

Sequences:

>Translated_143_residues
MTTLHPFGTTITDATLRQIFAPLNQWEDKYRQLILLGKKLPTLTDERKAQAHEIAGCENRVWLGYEEDAEGRLHFFGDSE
GRIVRGLLAVLLTAVEGKTRAGILAQDPLALFDELGLRGQLSASRSQGLSALSEAVLAAARER
>Mature_142_residues
TTLHPFGTTITDATLRQIFAPLNQWEDKYRQLILLGKKLPTLTDERKAQAHEIAGCENRVWLGYEEDAEGRLHFFGDSEG
RIVRGLLAVLLTAVEGKTRAGILAQDPLALFDELGLRGQLSASRSQGLSALSEAVLAAARER

Specific function: Unknown

COG id: COG2166

COG function: function code R; SufE protein probably involved in Fe-S center assembly

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sufE family [H]

Homologues:

Organism=Escherichia coli, GI1789176, Length=138, Percent_Identity=77.536231884058, Blast_Score=222, Evalue=8e-60,
Organism=Escherichia coli, GI1787969, Length=107, Percent_Identity=38.3177570093458, Blast_Score=87, Evalue=6e-19,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017763
- InterPro:   IPR003808 [H]

Pfam domain/function: PF02657 SufE [H]

EC number: NA

Molecular weight: Translated: 15743; Mature: 15612

Theoretical pI: Translated: 6.26; Mature: 6.26

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
0.7 %Met     (Translated Protein)
1.4 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
0.0 %Met     (Mature Protein)
0.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTTLHPFGTTITDATLRQIFAPLNQWEDKYRQLILLGKKLPTLTDERKAQAHEIAGCENR
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCCCC
VWLGYEEDAEGRLHFFGDSEGRIVRGLLAVLLTAVEGKTRAGILAQDPLALFDELGLRGQ
EEECCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHCCCCCC
LSASRSQGLSALSEAVLAAARER
CCCHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
TTLHPFGTTITDATLRQIFAPLNQWEDKYRQLILLGKKLPTLTDERKAQAHEIAGCENR
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCCCC
VWLGYEEDAEGRLHFFGDSEGRIVRGLLAVLLTAVEGKTRAGILAQDPLALFDELGLRGQ
EEECCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHCCCCCC
LSASRSQGLSALSEAVLAAARER
CCCHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]