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The map label for this gene is syd [H]

Identifier: 238896255

GI number: 238896255

Start: 4233315

End: 4233860

Strand: Reverse

Name: syd [H]

Synonym: KP1_4408

Alternate gene names: 238896255

Gene position: 4233860-4233315 (Counterclockwise)

Preceding gene: 238896261

Following gene: 238896254

Centisome position: 80.67

GC content: 57.51

Gene sequence:

>546_bases
GTGGACCATCAGACAGCAGAAGCGCTACGCGCTTTTACCCAACGATATTGCGCCGTCTGGCAGCAGCAGCGCCACAGCCT
GCCGCGCAGTGAAGAGCTTTACGGCGTCCCGTCGCCTTGCGTTGTCGACACCCAGGGCGAGGCCGTTTTCTGGCAGCCGC
AGCCGTTTTCGCTGGCGCAAAATATCAGCGCGGTTGAACGCGCCCTCGACATTGTGGTACAACAGCCGCTTCATTCTTAT
TATACCACTCAGTTTGCCGGCGATATGTCCGGCCGGTTTGCCGGCGAAACCTTGACGCTGCTGCAGACCTGGAGTGAAGA
GGATTTCCAGCGGGTGCAGGAAAATTTAATCGGGCACCTGGTGGTGCAGAAGCGGTTGAAGCTGTCGCCGACGCTGTTCA
TCGCCACCCTCGAGAGTGAACTGGATGTGATATCCGTCTGTAATCTCAGCGGCGAGGTAGTCAAAGAGACCCTCGGCACC
GCCAAACGCATTACGCTTTCTCCCTCACTTGCGGGTTTCCTCAACCACCTTGAGCCAGTTCTGTAA

Upstream 100 bases:

>100_bases
GCCAGCGCCTGATGATTATCGTAAGAAGACATGTTTCACCATAGTAAAGCGGGTACACTATTGCTCCAGTGTATCCTGTC
TAACGTGAAGAGAGAAACCG

Downstream 100 bases:

>100_bases
TCCAGTCTGCCAGATCGTTTGTGAGAGATCTCTTACAAAACCTGTAAGAGATCGTCATCATTTAAGGTAAATTTAATCCA
TACTTTTTTATATAAGTTGT

Product: SecY interacting protein Syd

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 181; Mature: 181

Protein sequence:

>181_residues
MDHQTAEALRAFTQRYCAVWQQQRHSLPRSEELYGVPSPCVVDTQGEAVFWQPQPFSLAQNISAVERALDIVVQQPLHSY
YTTQFAGDMSGRFAGETLTLLQTWSEEDFQRVQENLIGHLVVQKRLKLSPTLFIATLESELDVISVCNLSGEVVKETLGT
AKRITLSPSLAGFLNHLEPVL

Sequences:

>Translated_181_residues
MDHQTAEALRAFTQRYCAVWQQQRHSLPRSEELYGVPSPCVVDTQGEAVFWQPQPFSLAQNISAVERALDIVVQQPLHSY
YTTQFAGDMSGRFAGETLTLLQTWSEEDFQRVQENLIGHLVVQKRLKLSPTLFIATLESELDVISVCNLSGEVVKETLGT
AKRITLSPSLAGFLNHLEPVL
>Mature_181_residues
MDHQTAEALRAFTQRYCAVWQQQRHSLPRSEELYGVPSPCVVDTQGEAVFWQPQPFSLAQNISAVERALDIVVQQPLHSY
YTTQFAGDMSGRFAGETLTLLQTWSEEDFQRVQENLIGHLVVQKRLKLSPTLFIATLESELDVISVCNLSGEVVKETLGT
AKRITLSPSLAGFLNHLEPVL

Specific function: Interacts with the secY protein in vivo. May bind preferentially to an uncomplexed state of secY, thus functioning either as a chelating agent for excess secY in the cell or as a regulatory factor that negatively controls the translocase function [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell inner membrane; Peripheral membrane protein; Cytoplasmic side. Note=Loosely associated with the Cytoplasmic side of the inner membrane, probably via secY (By similarity) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the Syd family [H]

Homologues:

Organism=Escherichia coli, GI1789157, Length=181, Percent_Identity=67.9558011049724, Blast_Score=261, Evalue=1e-71,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009948 [H]

Pfam domain/function: PF07348 Syd [H]

EC number: NA

Molecular weight: Translated: 20300; Mature: 20300

Theoretical pI: Translated: 4.98; Mature: 4.98

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDHQTAEALRAFTQRYCAVWQQQRHSLPRSEELYGVPSPCVVDTQGEAVFWQPQPFSLAQ
CCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEECCCCEEEECCCCHHHHH
NISAVERALDIVVQQPLHSYYTTQFAGDMSGRFAGETLTLLQTWSEEDFQRVQENLIGHL
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCHHHHHHHHHHHHHHH
VVQKRLKLSPTLFIATLESELDVISVCNLSGEVVKETLGTAKRITLSPSLAGFLNHLEPV
HHHHHHCCCCEEEEEECCCCCCCHHHHCCCHHHHHHHHCCHHEEEECHHHHHHHHHHHCC
L
C
>Mature Secondary Structure
MDHQTAEALRAFTQRYCAVWQQQRHSLPRSEELYGVPSPCVVDTQGEAVFWQPQPFSLAQ
CCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEECCCCEEEECCCCHHHHH
NISAVERALDIVVQQPLHSYYTTQFAGDMSGRFAGETLTLLQTWSEEDFQRVQENLIGHL
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCHHHHHHHHHHHHHHH
VVQKRLKLSPTLFIATLESELDVISVCNLSGEVVKETLGTAKRITLSPSLAGFLNHLEPV
HHHHHHCCCCEEEEEECCCCCCCHHHHCCCHHHHHHHHCCHHEEEECHHHHHHHHHHHCC
L
C

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA