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The map label for this gene is nodD2 [H]

Identifier: 238896090

GI number: 238896090

Start: 4060955

End: 4061854

Strand: Reverse

Name: nodD2 [H]

Synonym: KP1_4227

Alternate gene names: 238896090

Gene position: 4061854-4060955 (Counterclockwise)

Preceding gene: 238896093

Following gene: 238896089

Centisome position: 77.39

GC content: 60.33

Gene sequence:

>900_bases
ATGCGTTATCAACATCTTGACCTGAACTTACTGGTGGCACTGGATGTGTTACTGGATGAACAGAACATTACGCGCGCGGC
GGGCCGGTTGCATATGACCCAGTCTGCCACCAGCGGGGTACTCAACCGGCTGCGCACCTACTTTGAGGACGACCTGCTCA
CCCAGGTGGGCAGAAAGATGCGGCCCACGCCGCTGGCGGAAGAGCTGCGGGAGCCGGTTCGCGACGTGCTGATGAAAATT
CAGACCTCTATTGCCCGCCGGCCAGTGGATGAGCCGGCAACCAGCAAGCGCCATTTTCGCATTATGGCCTCGGATTATGT
GATCAACGTGATGTTGAAGGATGCGCTGCAGGCGGTACATCAGGAAGCGCCGAGTATGACCTTTGAGTTTTTCTCGCCTG
ACGCCCAGTCCACCGGCATGCTCAACCGCGGCGAGCTGGATATCATCGTGGCGCCGGAACGTTTTATGGCCGCTGACCAT
CCTGCCGAAGCGCTGTTTGACGAAGAGTTTGTCTGCCTGGCCTGGGCGGACAATCCCCACACCGGCGAGACGCTGACCCT
CGACGCCTGGCAACAGCTGGGGCACGTGTCGGTGGTCTTTGGCCGTGAGCGGCAGCCGGGGCTGGAGGGCAATCTGTTTG
CCGAGTCGGGGCTAAGTCGTCGTATCGAGGTGGTGACTCACAGCTACCATTGCGTTCCGCAGCTGCTAATCGGCACTTCG
CGGATCGCCACGCTGCACCGGCGGTTGGCGGAACAGTACGCGGCGATGCTGCCGCTGCGTCTTTTCCCGGTCCCGGTGAC
CCTGCCGATGATGCGCGAATTTATCGGCTGGCACCGCTCGCTGGATAACGATCCTATCTTCGGCTGGCTGAAGGCAAAAA
TCGTCGCCAGCGCAAGCTAA

Upstream 100 bases:

>100_bases
ATCGCAAAAAACAATATCGCCGTGGAAATTGAAAACAAAAAGTTGCAGAAAAGTTAAATTAAGCCACAGGATAAGCACGC
CATTTCTCGCCGGGGGACCC

Downstream 100 bases:

>100_bases
CCCACGGGTATTGCTTCCGTCGATACCTGACATCCTGAGACATGATTGGTCGCCCGCAGGTGCTTTATGTGACAGTGCCT
GCGCTAAAGCGACTGCGACT

Product: modulation protein d1

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 299; Mature: 299

Protein sequence:

>299_residues
MRYQHLDLNLLVALDVLLDEQNITRAAGRLHMTQSATSGVLNRLRTYFEDDLLTQVGRKMRPTPLAEELREPVRDVLMKI
QTSIARRPVDEPATSKRHFRIMASDYVINVMLKDALQAVHQEAPSMTFEFFSPDAQSTGMLNRGELDIIVAPERFMAADH
PAEALFDEEFVCLAWADNPHTGETLTLDAWQQLGHVSVVFGRERQPGLEGNLFAESGLSRRIEVVTHSYHCVPQLLIGTS
RIATLHRRLAEQYAAMLPLRLFPVPVTLPMMREFIGWHRSLDNDPIFGWLKAKIVASAS

Sequences:

>Translated_299_residues
MRYQHLDLNLLVALDVLLDEQNITRAAGRLHMTQSATSGVLNRLRTYFEDDLLTQVGRKMRPTPLAEELREPVRDVLMKI
QTSIARRPVDEPATSKRHFRIMASDYVINVMLKDALQAVHQEAPSMTFEFFSPDAQSTGMLNRGELDIIVAPERFMAADH
PAEALFDEEFVCLAWADNPHTGETLTLDAWQQLGHVSVVFGRERQPGLEGNLFAESGLSRRIEVVTHSYHCVPQLLIGTS
RIATLHRRLAEQYAAMLPLRLFPVPVTLPMMREFIGWHRSLDNDPIFGWLKAKIVASAS
>Mature_299_residues
MRYQHLDLNLLVALDVLLDEQNITRAAGRLHMTQSATSGVLNRLRTYFEDDLLTQVGRKMRPTPLAEELREPVRDVLMKI
QTSIARRPVDEPATSKRHFRIMASDYVINVMLKDALQAVHQEAPSMTFEFFSPDAQSTGMLNRGELDIIVAPERFMAADH
PAEALFDEEFVCLAWADNPHTGETLTLDAWQQLGHVSVVFGRERQPGLEGNLFAESGLSRRIEVVTHSYHCVPQLLIGTS
RIATLHRRLAEQYAAMLPLRLFPVPVTLPMMREFIGWHRSLDNDPIFGWLKAKIVASAS

Specific function: NodD regulates the expression of the nodABCFE genes which encode other nodulation proteins. NodD is also a negative regulator of its own expression. Binds flavonoids as inducers [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87081684, Length=296, Percent_Identity=28.0405405405405, Blast_Score=106, Evalue=2e-24,
Organism=Escherichia coli, GI1790147, Length=300, Percent_Identity=23, Blast_Score=71, Evalue=7e-14,

Paralogues:

None

Copy number: 825 Molecules/Cell In: Growth Phase, Glucose-minimal MOPS Media. [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 33864; Mature: 33864

Theoretical pI: Translated: 6.44; Mature: 6.44

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
4.0 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
4.0 %Met     (Mature Protein)
4.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRYQHLDLNLLVALDVLLDEQNITRAAGRLHMTQSATSGVLNRLRTYFEDDLLTQVGRKM
CCCEECCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
RPTPLAEELREPVRDVLMKIQTSIARRPVDEPATSKRHFRIMASDYVINVMLKDALQAVH
CCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEHHHHHHHHHHHHHHHHH
QEAPSMTFEFFSPDAQSTGMLNRGELDIIVAPERFMAADHPAEALFDEEFVCLAWADNPH
HHCCCCEEEEECCCCCCCCCCCCCCEEEEECCHHHHCCCCCHHHHCCCCEEEEEECCCCC
TGETLTLDAWQQLGHVSVVFGRERQPGLEGNLFAESGLSRRIEVVTHSYHCVPQLLIGTS
CCCEEEHHHHHHCCCEEEEECCCCCCCCCCCCCHHCCCCCEEHHHHCCHHHHHHHHHHHH
RIATLHRRLAEQYAAMLPLRLFPVPVTLPMMREFIGWHRSLDNDPIFGWLKAKIVASAS
HHHHHHHHHHHHHHHHCCHHEECCCCCHHHHHHHHHHHHCCCCCCCHHHHHHEEEECCC
>Mature Secondary Structure
MRYQHLDLNLLVALDVLLDEQNITRAAGRLHMTQSATSGVLNRLRTYFEDDLLTQVGRKM
CCCEECCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
RPTPLAEELREPVRDVLMKIQTSIARRPVDEPATSKRHFRIMASDYVINVMLKDALQAVH
CCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEHHHHHHHHHHHHHHHHH
QEAPSMTFEFFSPDAQSTGMLNRGELDIIVAPERFMAADHPAEALFDEEFVCLAWADNPH
HHCCCCEEEEECCCCCCCCCCCCCCEEEEECCHHHHCCCCCHHHHCCCCEEEEEECCCCC
TGETLTLDAWQQLGHVSVVFGRERQPGLEGNLFAESGLSRRIEVVTHSYHCVPQLLIGTS
CCCEEEHHHHHHCCCEEEEECCCCCCCCCCCCCHHCCCCCEEHHHHCCHHHHHHHHHHHH
RIATLHRRLAEQYAAMLPLRLFPVPVTLPMMREFIGWHRSLDNDPIFGWLKAKIVASAS
HHHHHHHHHHHHHHHHCCHHEECCCCCHHHHHHHHHHHHCCCCCCCHHHHHHEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 2215216 [H]