Click here to switch to the map view.

The map label for this gene is araH [H]

Identifier: 238895456

GI number: 238895456

Start: 3342659

End: 3343642

Strand: Reverse

Name: araH [H]

Synonym: KP1_3525

Alternate gene names: 238895456

Gene position: 3343642-3342659 (Counterclockwise)

Preceding gene: 238895457

Following gene: 238895455

Centisome position: 63.71

GC content: 57.93

Gene sequence:

>984_bases
ATGATGTCATCAGTGACTACGTCCGGGGCTACCCGCTCAACCTTTAGCTTTGCCCGCATCTGGGATCAGTTTGGCATGCT
GGTGGTGTTTGCGGTGCTGTTTATCGGCTGTGTGATTTTTGTGCCCAACTTTGCTTCATTCGTCAATATGAAAGGGCTGG
GGCTGGCGATCTCGATGTCCGGGATGGTGGCCTGCGGCATGCTGTTTTGCCTGGCCTCCGGCGATTTTGACCTGTCGGTG
GCGTCGGTTATCGCCTGCGCCGGGGTCACCACCGCGGTGGTGATTAATCTCAGCGAAAGCCTGTGGCTGGGGATCGCCGC
AGGCCTGTTGCTGGGGGCGCTTAGTGGCCTGGTTAACGGCTTTGTCATTGCGCGCCTTAAGATCAACGCGCTGATCACCA
CGCTGGCCACCATGCAGATTGTCCGCGGCCTGGCCTATATTATCTCCGACGGCAAAGCGGTGGGGATCGAAGATGAACGT
TTCTTCACCCTCGGCTATGCCAATTGGTTTGGTTTGCCGGCGCCGATCTGGCTGACCGTCGCCTGCCTGGTGGTTTTCGG
ATTATTACTAAACAAAACCACCTTTGGCCGTAATACGCTGGCTATTGGCGGCAATGAAGAGGCGGCGCGCCTGGCCGGCG
TCCCGGTGGTGCGCACCAAGATTATTATCTTTGTGCTCTCCGGTCTGGTATCGGCCGCAGCGGGTATCATTCTGGCGTCG
CGGATGACCAGCGGCCAGCCGATGACCTCGATTGGCTATGAGCTGATTGTTATTTCGGCCTGCGTGCTGGGCGGAGTGTC
GCTGAAGGGCGGGATCGGCAAGATCTCCTACGTGGTGGCCGGGATCCTGATCCTCGGAACCGTGGAAAATGCGATGAACC
TGCTGAATATCTCGCCATTCTCACAATACGTCGTGCGCGGGGTGATCCTGCTGGCGGCGGTGATCTTCGACCGCTACAAA
CAAAAAGCCAAACGTGCGGCCTGA

Upstream 100 bases:

>100_bases
AAATCGCCGGCGAACTGCTGCATGAAGAAGCCAATGAACAGCAGGCGTTAAGCCTTGCGATGCCAACAGTGAGCCAGGCT
GTCGCCTGAGTAAGGAGTAA

Downstream 100 bases:

>100_bases
ATTTAAACCGAACTTTTTAGTTTACAGAGTAATTGCCGCCAGCGCCCGTTTCGCTGGCGGTAACTATCAAAAATGGCGAG
GTTGGTCACACTGTCTATAC

Product: L-arabinose transporter permease protein

Products: ADP; phosphate; arabinose [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 327; Mature: 327

Protein sequence:

>327_residues
MMSSVTTSGATRSTFSFARIWDQFGMLVVFAVLFIGCVIFVPNFASFVNMKGLGLAISMSGMVACGMLFCLASGDFDLSV
ASVIACAGVTTAVVINLSESLWLGIAAGLLLGALSGLVNGFVIARLKINALITTLATMQIVRGLAYIISDGKAVGIEDER
FFTLGYANWFGLPAPIWLTVACLVVFGLLLNKTTFGRNTLAIGGNEEAARLAGVPVVRTKIIIFVLSGLVSAAAGIILAS
RMTSGQPMTSIGYELIVISACVLGGVSLKGGIGKISYVVAGILILGTVENAMNLLNISPFSQYVVRGVILLAAVIFDRYK
QKAKRAA

Sequences:

>Translated_327_residues
MMSSVTTSGATRSTFSFARIWDQFGMLVVFAVLFIGCVIFVPNFASFVNMKGLGLAISMSGMVACGMLFCLASGDFDLSV
ASVIACAGVTTAVVINLSESLWLGIAAGLLLGALSGLVNGFVIARLKINALITTLATMQIVRGLAYIISDGKAVGIEDER
FFTLGYANWFGLPAPIWLTVACLVVFGLLLNKTTFGRNTLAIGGNEEAARLAGVPVVRTKIIIFVLSGLVSAAAGIILAS
RMTSGQPMTSIGYELIVISACVLGGVSLKGGIGKISYVVAGILILGTVENAMNLLNISPFSQYVVRGVILLAAVIFDRYK
QKAKRAA
>Mature_327_residues
MMSSVTTSGATRSTFSFARIWDQFGMLVVFAVLFIGCVIFVPNFASFVNMKGLGLAISMSGMVACGMLFCLASGDFDLSV
ASVIACAGVTTAVVINLSESLWLGIAAGLLLGALSGLVNGFVIARLKINALITTLATMQIVRGLAYIISDGKAVGIEDER
FFTLGYANWFGLPAPIWLTVACLVVFGLLLNKTTFGRNTLAIGGNEEAARLAGVPVVRTKIIIFVLSGLVSAAAGIILAS
RMTSGQPMTSIGYELIVISACVLGGVSLKGGIGKISYVVAGILILGTVENAMNLLNISPFSQYVVRGVILLAAVIFDRYK
QKAKRAA

Specific function: Part of the binding-protein-dependent transport system for L-arabinose. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG1172

COG function: function code G; Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the binding-protein-dependent transport system permease family. AraH/rbsC subfamily [H]

Homologues:

Organism=Escherichia coli, GI145693152, Length=326, Percent_Identity=92.3312883435583, Blast_Score=577, Evalue=1e-166,
Organism=Escherichia coli, GI1790191, Length=324, Percent_Identity=35.1851851851852, Blast_Score=167, Evalue=7e-43,
Organism=Escherichia coli, GI1790524, Length=327, Percent_Identity=28.7461773700306, Blast_Score=140, Evalue=1e-34,
Organism=Escherichia coli, GI1788896, Length=312, Percent_Identity=32.6923076923077, Blast_Score=139, Evalue=4e-34,
Organism=Escherichia coli, GI1789992, Length=132, Percent_Identity=45.4545454545455, Blast_Score=120, Evalue=1e-28,
Organism=Escherichia coli, GI87082395, Length=271, Percent_Identity=33.9483394833948, Blast_Score=112, Evalue=4e-26,
Organism=Escherichia coli, GI1787793, Length=256, Percent_Identity=34.765625, Blast_Score=98, Evalue=6e-22,
Organism=Escherichia coli, GI1788471, Length=331, Percent_Identity=31.4199395770393, Blast_Score=94, Evalue=9e-21,
Organism=Escherichia coli, GI1787794, Length=274, Percent_Identity=29.9270072992701, Blast_Score=91, Evalue=9e-20,
Organism=Escherichia coli, GI145693214, Length=242, Percent_Identity=36.7768595041322, Blast_Score=89, Evalue=3e-19,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001851 [H]

Pfam domain/function: PF02653 BPD_transp_2 [H]

EC number: NA

Molecular weight: Translated: 34199; Mature: 34199

Theoretical pI: Translated: 9.69; Mature: 9.69

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
5.2 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
5.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMSSVTTSGATRSTFSFARIWDQFGMLVVFAVLFIGCVIFVPNFASFVNMKGLGLAISMS
CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCCCCCEEEEHH
GMVACGMLFCLASGDFDLSVASVIACAGVTTAVVINLSESLWLGIAAGLLLGALSGLVNG
HHHHHHHHHHHHCCCCCHHHHHHHHHHCHHHHHEEECCHHHHHHHHHHHHHHHHHHHHHH
FVIARLKINALITTLATMQIVRGLAYIISDGKAVGIEDERFFTLGYANWFGLPAPIWLTV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEECCCCCEEEEEECHHHCCCCHHHHHHH
ACLVVFGLLLNKTTFGRNTLAIGGNEEAARLAGVPVVRTKIIIFVLSGLVSAAAGIILAS
HHHHHHHHHHCCCCCCCCEEEECCCCHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
RMTSGQPMTSIGYELIVISACVLGGVSLKGGIGKISYVVAGILILGTVENAMNLLNISPF
HCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHH
SQYVVRGVILLAAVIFDRYKQKAKRAA
HHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MMSSVTTSGATRSTFSFARIWDQFGMLVVFAVLFIGCVIFVPNFASFVNMKGLGLAISMS
CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCCCCCEEEEHH
GMVACGMLFCLASGDFDLSVASVIACAGVTTAVVINLSESLWLGIAAGLLLGALSGLVNG
HHHHHHHHHHHHCCCCCHHHHHHHHHHCHHHHHEEECCHHHHHHHHHHHHHHHHHHHHHH
FVIARLKINALITTLATMQIVRGLAYIISDGKAVGIEDERFFTLGYANWFGLPAPIWLTV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEECCCCCEEEEEECHHHCCCCHHHHHHH
ACLVVFGLLLNKTTFGRNTLAIGGNEEAARLAGVPVVRTKIIIFVLSGLVSAAAGIILAS
HHHHHHHHHHCCCCCCCCEEEECCCCHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
RMTSGQPMTSIGYELIVISACVLGGVSLKGGIGKISYVVAGILILGTVENAMNLLNISPF
HCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHH
SQYVVRGVILLAAVIFDRYKQKAKRAA
HHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; arabinose [Periplasm]; H2O [C]

Specific reaction: ATP + arabinose [Periplasm] + H2O = ADP + phosphate + arabinose [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 2445996; 9097040; 9278503; 8045430 [H]