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The map label for this gene is ychA [H]

Identifier: 238895292

GI number: 238895292

Start: 3176183

End: 3176995

Strand: Reverse

Name: ychA [H]

Synonym: KP1_3346

Alternate gene names: 238895292

Gene position: 3176995-3176183 (Counterclockwise)

Preceding gene: 238895293

Following gene: 238895291

Centisome position: 60.53

GC content: 58.3

Gene sequence:

>813_bases
ATGGGGTCATTAGCGGATTTCGAATTTAACAAAGCGCCATTGTGTGATGGCATGGTCCTCATTTCTGAACAGGTCCGCGA
CGATTTTCCGTCGCGTTTTGTCGAGGAAGAGCTGCAGCGATTGCTGCGCCTCGCGCAGGAGGAGATTGCGCCGTCGTGGG
ACCAGGAGCGCCAGATAGAACGATTGCTGGAGCTGTTTTACGACGAGTGGGGCTTTGGCGCCTCGCAGGGCGTGTATCGT
CTTTCCGACGCGCTATGGCTGGATAAAGTGCTGGTTAACCGCCAGGGGAGCGCGGTGTCGTTAGGCGCGATCCTGCTGTG
GATCGCCCAGCGCCTGGCGCTGCCGGTGGTGCCGGTGATCTTCCCGACCCAGATGCTGCTGCGTGCGGACCCGGAAACCA
GCGAAGAGATGTGGCTGATTAATCCGTTTAACGGCGAGACCCTCGACGAGCATACCCTGGAGGTATGGCTGAAGGGCAAC
ATCGGGCCGGTGGCGGAACTGTTTAATGAAGATCTCGACGAAGCGGATAACGCCGAGGTGATCCGCAAGCTGCTGGACAC
CCTGAAGTCGGCGCTGATGGAAGAGCGGCAGATGGAGCTGGCCCTGCGCGCCAGCGAAGCGCTGCTGCAGTTTAATCCGG
AAGATCCGTATGAGATCCGCGACCGCGGGCTGATATACGCCCAGCTGGACTGCGATCACGTGGCGCTGTTGGATCTGAGC
TATTTCGTTGAGCAGTGCCCGGAGGATCCGATCAGCGAGATGATCCGCGCGCAGATCAACACGATTTCGCATAAACAAAT
TACATTGCATTAG

Upstream 100 bases:

>100_bases
CAGCCAGCAGAGCCGCTTTATCGCGTTCCTGCTGGCGCTGGTGGTGTTGTTTATCATCATTCAACTCGCCATCACAAGAA
TACCGATACTGGGGTAGGTC

Downstream 100 bases:

>100_bases
TCTGGAACCATTCCGGTTACACCCTGATAAGGCGAACTTATGAAACAAAAAGTGGTTAGCATTGGTGATATCAACGTAGC
GAACGACCTGCCGTTCGTGC

Product: putative transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 270; Mature: 269

Protein sequence:

>270_residues
MGSLADFEFNKAPLCDGMVLISEQVRDDFPSRFVEEELQRLLRLAQEEIAPSWDQERQIERLLELFYDEWGFGASQGVYR
LSDALWLDKVLVNRQGSAVSLGAILLWIAQRLALPVVPVIFPTQMLLRADPETSEEMWLINPFNGETLDEHTLEVWLKGN
IGPVAELFNEDLDEADNAEVIRKLLDTLKSALMEERQMELALRASEALLQFNPEDPYEIRDRGLIYAQLDCDHVALLDLS
YFVEQCPEDPISEMIRAQINTISHKQITLH

Sequences:

>Translated_270_residues
MGSLADFEFNKAPLCDGMVLISEQVRDDFPSRFVEEELQRLLRLAQEEIAPSWDQERQIERLLELFYDEWGFGASQGVYR
LSDALWLDKVLVNRQGSAVSLGAILLWIAQRLALPVVPVIFPTQMLLRADPETSEEMWLINPFNGETLDEHTLEVWLKGN
IGPVAELFNEDLDEADNAEVIRKLLDTLKSALMEERQMELALRASEALLQFNPEDPYEIRDRGLIYAQLDCDHVALLDLS
YFVEQCPEDPISEMIRAQINTISHKQITLH
>Mature_269_residues
GSLADFEFNKAPLCDGMVLISEQVRDDFPSRFVEEELQRLLRLAQEEIAPSWDQERQIERLLELFYDEWGFGASQGVYRL
SDALWLDKVLVNRQGSAVSLGAILLWIAQRLALPVVPVIFPTQMLLRADPETSEEMWLINPFNGETLDEHTLEVWLKGNI
GPVAELFNEDLDEADNAEVIRKLLDTLKSALMEERQMELALRASEALLQFNPEDPYEIRDRGLIYAQLDCDHVALLDLSY
FVEQCPEDPISEMIRAQINTISHKQITLH

Specific function: Not essential for the expression of the invasive phenotype. Required for maximal expression of sirC [H]

COG id: COG2912

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0162 family [H]

Homologues:

Organism=Escherichia coli, GI1787465, Length=270, Percent_Identity=75.1851851851852, Blast_Score=412, Evalue=1e-116,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011990 [H]

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 30986; Mature: 30854

Theoretical pI: Translated: 4.06; Mature: 4.06

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGSLADFEFNKAPLCDGMVLISEQVRDDFPSRFVEEELQRLLRLAQEEIAPSWDQERQIE
CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHH
RLLELFYDEWGFGASQGVYRLSDALWLDKVLVNRQGSAVSLGAILLWIAQRLALPVVPVI
HHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCHHHHH
FPTQMLLRADPETSEEMWLINPFNGETLDEHTLEVWLKGNIGPVAELFNEDLDEADNAEV
HHHHHHHHCCCCCCCCEEEEECCCCCCCCCHHEEEEECCCCCHHHHHHHHHCCCCCCHHH
IRKLLDTLKSALMEERQMELALRASEALLQFNPEDPYEIRDRGLIYAQLDCDHVALLDLS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHCCEEEEEECCCHHHHHHHH
YFVEQCPEDPISEMIRAQINTISHKQITLH
HHHHHCCCCHHHHHHHHHHHHCCCCEEEEC
>Mature Secondary Structure 
GSLADFEFNKAPLCDGMVLISEQVRDDFPSRFVEEELQRLLRLAQEEIAPSWDQERQIE
CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHH
RLLELFYDEWGFGASQGVYRLSDALWLDKVLVNRQGSAVSLGAILLWIAQRLALPVVPVI
HHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCHHHHH
FPTQMLLRADPETSEEMWLINPFNGETLDEHTLEVWLKGNIGPVAELFNEDLDEADNAEV
HHHHHHHHCCCCCCCCEEEEECCCCCCCCCHHEEEEECCCCCHHHHHHHHHCCCCCCHHH
IRKLLDTLKSALMEERQMELALRASEALLQFNPEDPYEIRDRGLIYAQLDCDHVALLDLS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHCCEEEEEECCCHHHHHHHH
YFVEQCPEDPISEMIRAQINTISHKQITLH
HHHHHCCCCHHHHHHHHHHHHCCCCEEEEC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11677608; 12644504 [H]