Click here to switch to the map view.

The map label for this gene is ychQ [H]

Identifier: 238895293

GI number: 238895293

Start: 3176999

End: 3177391

Strand: Reverse

Name: ychQ [H]

Synonym: KP1_3347

Alternate gene names: 238895293

Gene position: 3177391-3176999 (Counterclockwise)

Preceding gene: 238895294

Following gene: 238895292

Centisome position: 60.54

GC content: 54.71

Gene sequence:

>393_bases
ATGAACTTATTCACGGCTGTCCTCTACCTGCACATTGCCACAGTGGCGGTGTCGGTAGGATTGTTCGTTTTACGTTACTG
GTGGATGTATCACCAGAGCCCGCTGCTGAACCAGCGGTGGGTGCGAATTGCGCCGCACTGCAGCGATACGCTGCTGTTTC
TCAGCGGCGCGGGGTTAATGGCGATAACGCACTACCTGCCGTTCACAGAAGACGGCGCATGGCTGACTGAAAAGCTGTTT
GGCGTTATCATTTACGTCGCATTAGGTTTTATCGCGTTGGGCCGTCGTCGTCCGCGCAGCCAGCAGAGCCGCTTTATCGC
GTTCCTGCTGGCGCTGGTGGTGTTGTTTATCATCATTCAACTCGCCATCACAAGAATACCGATACTGGGGTAG

Upstream 100 bases:

>100_bases
TCCGCGAAGCGGGCTATCTGGACGTCGCGACCTGTCGCGACTATGGCGACAATGAGCGTCTGACCCTCGGACGTTTACCC
GACATGGAGAATGTTGGCTG

Downstream 100 bases:

>100_bases
GTCATGGGGTCATTAGCGGATTTCGAATTTAACAAAGCGCCATTGTGTGATGGCATGGTCCTCATTTCTGAACAGGTCCG
CGACGATTTTCCGTCGCGTT

Product: putative transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 130; Mature: 130

Protein sequence:

>130_residues
MNLFTAVLYLHIATVAVSVGLFVLRYWWMYHQSPLLNQRWVRIAPHCSDTLLFLSGAGLMAITHYLPFTEDGAWLTEKLF
GVIIYVALGFIALGRRRPRSQQSRFIAFLLALVVLFIIIQLAITRIPILG

Sequences:

>Translated_130_residues
MNLFTAVLYLHIATVAVSVGLFVLRYWWMYHQSPLLNQRWVRIAPHCSDTLLFLSGAGLMAITHYLPFTEDGAWLTEKLF
GVIIYVALGFIALGRRRPRSQQSRFIAFLLALVVLFIIIQLAITRIPILG
>Mature_130_residues
MNLFTAVLYLHIATVAVSVGLFVLRYWWMYHQSPLLNQRWVRIAPHCSDTLLFLSGAGLMAITHYLPFTEDGAWLTEKLF
GVIIYVALGFIALGRRRPRSQQSRFIAFLLALVVLFIIIQLAITRIPILG

Specific function: Unknown

COG id: COG3094

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1787464, Length=130, Percent_Identity=57.6923076923077, Blast_Score=147, Evalue=2e-37,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007360 [H]

Pfam domain/function: PF04247 SirB [H]

EC number: NA

Molecular weight: Translated: 14817; Mature: 14817

Theoretical pI: Translated: 10.51; Mature: 10.51

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNLFTAVLYLHIATVAVSVGLFVLRYWWMYHQSPLLNQRWVRIAPHCSDTLLFLSGAGLM
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEECCCCCHHHHHHHCCHHH
AITHYLPFTEDGAWLTEKLFGVIIYVALGFIALGRRRPRSQQSRFIAFLLALVVLFIIIQ
HHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHH
LAITRIPILG
HHHHHCCCCC
>Mature Secondary Structure
MNLFTAVLYLHIATVAVSVGLFVLRYWWMYHQSPLLNQRWVRIAPHCSDTLLFLSGAGLM
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEECCCCCHHHHHHHCCHHH
AITHYLPFTEDGAWLTEKLFGVIIYVALGFIALGRRRPRSQQSRFIAFLLALVVLFIIIQ
HHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHH
LAITRIPILG
HHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7543480; 8905232; 9278503 [H]