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The map label for this gene is ycdC [C]

Identifier: 238895180

GI number: 238895180

Start: 3062618

End: 3063256

Strand: Direct

Name: ycdC [C]

Synonym: KP1_3226

Alternate gene names: 238895180

Gene position: 3062618-3063256 (Clockwise)

Preceding gene: 238895175

Following gene: 238895183

Centisome position: 58.35

GC content: 58.06

Gene sequence:

>639_bases
ATGACCGTCGTTGCCCATGATGAAGCACAATCCCTGAAGGCGCGGATCTTCAGCGCCGCTATCGCTGTCTTTGCTGAACA
CGGGCTGTCAGGCGCCCGCATGGAGCAGATCGCCACCGAGGCGCAGACCACCAAACGCATGGTGGTTTACTACTTCAAAA
GCAAAGAACAGCTCTATCAGGAGGTGCTGCAGCATGTGTATGCGCGGATCCGCGAAACCGAGCAGCAGCTGGGGCTGGAG
AATGTGCCGCCGGTGGAGGCGCTGGTGCGGCTGGTGCGCTGGAGCGTGCGCTATCACGCCACCCATGCGGACTATATGCG
CGTCATTTGCATGGAGAATATGCAGCGCGGCAAGTGGTTAAAAAGCTCGGGTGAACTGAAGCCGCTGAATCGTACCGCCC
TGTCGATTCTGGAAGACATTTTACTGCGCGGCCAGCAGCAGGGCGTCTTTCAGGCGGGGCTCGACGCGCGCGATGTCCAC
CGGTTAATCAGCAGCTTCAGCTTTTATCAGGTGTCGAACTTCTACACCTTCAGCAGCCTGTATCTTGACGATCCGCTACC
CGCCATCGACGATGAAGCGATGGTGGCTCACCATTGTGACATTGCCGTCAGGGCGGTGATCCGCTTCGTGATTTCCTGA

Upstream 100 bases:

>100_bases
AAGCCTTGAATATGTATCATTTGGTTCATTTGCGCCATACCAGGTTGCTAAATTGTGATCATTATGTGTATTTTTTGTCA
CCCAAGAAAAAGGAGTTGCC

Downstream 100 bases:

>100_bases
CCCGCCGGCGTAAGGGTTCAGTGCCCGGAAAGCGCATGAATGACTTTCTCCATGGCCTCCACGGTGAGCGGCGAACGCTG
GATTTTGCGGTTCGCCAGCG

Product: putative regulatory protein

Products: NA

Alternate protein names: Transcriptional Regulator TetR Family; Transcriptional Regulator; TetR Family Regulatory Protein; Transcriptional Regulator Protein; Transcriptional Regulator TetR Family Protein; Transcriptional Regulator TetR/ArcR Family; HTH-Type Transcriptional Regulator; Transcriptional Regulator Protein TetR Family; Transcriptional Regulator Tetr Family; TetR Family Transcriptional Regulatory Protein; TetR-Family Transcriptional Regulator; TetR-Family Transcriptional Regulatory Protein; TRANSCRIPTIONal REGULATOR TetR Family; Transcription Regulator Protein Tetr-Like; Transcription Regulator; Regulatory Protein TetR; Transcriptional Regulator TetR; TetR/AcrR Family Transcriptional Regulator

Number of amino acids: Translated: 212; Mature: 211

Protein sequence:

>212_residues
MTVVAHDEAQSLKARIFSAAIAVFAEHGLSGARMEQIATEAQTTKRMVVYYFKSKEQLYQEVLQHVYARIRETEQQLGLE
NVPPVEALVRLVRWSVRYHATHADYMRVICMENMQRGKWLKSSGELKPLNRTALSILEDILLRGQQQGVFQAGLDARDVH
RLISSFSFYQVSNFYTFSSLYLDDPLPAIDDEAMVAHHCDIAVRAVIRFVIS

Sequences:

>Translated_212_residues
MTVVAHDEAQSLKARIFSAAIAVFAEHGLSGARMEQIATEAQTTKRMVVYYFKSKEQLYQEVLQHVYARIRETEQQLGLE
NVPPVEALVRLVRWSVRYHATHADYMRVICMENMQRGKWLKSSGELKPLNRTALSILEDILLRGQQQGVFQAGLDARDVH
RLISSFSFYQVSNFYTFSSLYLDDPLPAIDDEAMVAHHCDIAVRAVIRFVIS
>Mature_211_residues
TVVAHDEAQSLKARIFSAAIAVFAEHGLSGARMEQIATEAQTTKRMVVYYFKSKEQLYQEVLQHVYARIRETEQQLGLEN
VPPVEALVRLVRWSVRYHATHADYMRVICMENMQRGKWLKSSGELKPLNRTALSILEDILLRGQQQGVFQAGLDARDVHR
LISSFSFYQVSNFYTFSSLYLDDPLPAIDDEAMVAHHCDIAVRAVIRFVIS

Specific function: Unknown

COG id: COG1309

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 24235; Mature: 24104

Theoretical pI: Translated: 7.27; Mature: 7.27

Prosite motif: PS50977 HTH_TETR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTVVAHDEAQSLKARIFSAAIAVFAEHGLSGARMEQIATEAQTTKRMVVYYFKSKEQLYQ
CEEECCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHEEECCHHHHHH
EVLQHVYARIRETEQQLGLENVPPVEALVRLVRWSVRYHATHADYMRVICMENMQRGKWL
HHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCC
KSSGELKPLNRTALSILEDILLRGQQQGVFQAGLDARDVHRLISSFSFYQVSNFYTFSSL
CCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHCCCHHHHHHHHHHHHHHHHHCEEEHHHE
YLDDPLPAIDDEAMVAHHCDIAVRAVIRFVIS
EECCCCCCCCCCHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
TVVAHDEAQSLKARIFSAAIAVFAEHGLSGARMEQIATEAQTTKRMVVYYFKSKEQLYQ
EEECCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHEEECCHHHHHH
EVLQHVYARIRETEQQLGLENVPPVEALVRLVRWSVRYHATHADYMRVICMENMQRGKWL
HHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCC
KSSGELKPLNRTALSILEDILLRGQQQGVFQAGLDARDVHRLISSFSFYQVSNFYTFSSL
CCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHCCCHHHHHHHHHHHHHHHHHCEEEHHHE
YLDDPLPAIDDEAMVAHHCDIAVRAVIRFVIS
EECCCCCCCCCCHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA