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The map label for this gene is cas1 [H]

Identifier: 238895125

GI number: 238895125

Start: 3002916

End: 3003800

Strand: Reverse

Name: cas1 [H]

Synonym: KP1_3165

Alternate gene names: 238895125

Gene position: 3003800-3002916 (Counterclockwise)

Preceding gene: 238895126

Following gene: 238895124

Centisome position: 57.23

GC content: 53.67

Gene sequence:

>885_bases
GTGCGGCTAATGGCCCAGGGGGAGAGGCTGTTTGTCAAAGTTACCCGCGAACTCCTGCCTCAGGTAAAAGATAAATATCC
TTTTCTCTATCTTGAGCGCGGGCGGCTGGAAATTGATGACAGCAGTGTGAAATGGGTGGATGCGGATGGCAACGTGGTGC
CTCTCCCAGTGGCGACCATCAACACGCTGCTGCTTGGCCCCGGGACAACTGTGACTCATGAGGCGATCAAAACCGCAACT
GCGGCTAACTGTGCGGTGTGCTGGGTGGGCGAGGATAGCCTGCTGTTTTATGCCGCCGGTTTTTTGCCTACTGCAGATAC
CCGCAATCTTAAAGCGCAGATGGCGCTGGCCTGCGATGCATCGTCTACCCTCAAGGTTGCCCGGGCGATGTTTGCTAAAC
GCTTTCCGGATGCCGATCTGGAGGGTAAAAGTTTAAACAGCATGATGGGCATGGAGGGGAGTCGGGTTCGCGCGTTGTAT
CAGCAGAAAGCGCAGGAGTATGGCGTCGGCTGGAAAGGGCGTCAGTTTACACCAGGCAAGTTTGAACTGAGTGACCTGAC
AAACCAGGTACTGACCTCCACCAACGCCGCCCTGTATGGCATTTTATGCTCGGTTGTGCATGCGATGGGCTACTCGCCGC
ATATCGGCTTTATCCATTCAGGTAGCCCTTTACCGTTTGTCTATGATCTGGCCGACCTTTACAAAGAACGGCTCTGTATT
GATTTGGCATTTTCACTCTCGAGGGAAATGGCGGGCCGCTACGATAAACACAAAGTCTCTGAGGCATTCAGAAAGCGAGT
GATAGCCCTGGATTTGCTCAACCTGATTGCGGCCGATATCAATGAGCTGATGGGAGGGAAAGGTGCTCGTCGTACTGGCA
AATGA

Upstream 100 bases:

>100_bases
TTGAAGGGGAAGGGGATGGCGATGTCATCACGCTTAATGATGTCCCGGTGCAGTTCGGCCGGCATAAGCGTTACCGGGAT
CGTCAGGTGACCGTGCTGGA

Downstream 100 bases:

>100_bases
TCTGCCGCCAGCGGTGCGTGGACGAATGAAGCTGTGGTTTGTCGAACCACGGCCAAATGTTTTTGTCTCAGGCGTCAAAG
ATTCGGTCGCGCAAACCGTT

Product: CRISPR-associated Cas1 family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 294; Mature: 294

Protein sequence:

>294_residues
MRLMAQGERLFVKVTRELLPQVKDKYPFLYLERGRLEIDDSSVKWVDADGNVVPLPVATINTLLLGPGTTVTHEAIKTAT
AANCAVCWVGEDSLLFYAAGFLPTADTRNLKAQMALACDASSTLKVARAMFAKRFPDADLEGKSLNSMMGMEGSRVRALY
QQKAQEYGVGWKGRQFTPGKFELSDLTNQVLTSTNAALYGILCSVVHAMGYSPHIGFIHSGSPLPFVYDLADLYKERLCI
DLAFSLSREMAGRYDKHKVSEAFRKRVIALDLLNLIAADINELMGGKGARRTGK

Sequences:

>Translated_294_residues
MRLMAQGERLFVKVTRELLPQVKDKYPFLYLERGRLEIDDSSVKWVDADGNVVPLPVATINTLLLGPGTTVTHEAIKTAT
AANCAVCWVGEDSLLFYAAGFLPTADTRNLKAQMALACDASSTLKVARAMFAKRFPDADLEGKSLNSMMGMEGSRVRALY
QQKAQEYGVGWKGRQFTPGKFELSDLTNQVLTSTNAALYGILCSVVHAMGYSPHIGFIHSGSPLPFVYDLADLYKERLCI
DLAFSLSREMAGRYDKHKVSEAFRKRVIALDLLNLIAADINELMGGKGARRTGK
>Mature_294_residues
MRLMAQGERLFVKVTRELLPQVKDKYPFLYLERGRLEIDDSSVKWVDADGNVVPLPVATINTLLLGPGTTVTHEAIKTAT
AANCAVCWVGEDSLLFYAAGFLPTADTRNLKAQMALACDASSTLKVARAMFAKRFPDADLEGKSLNSMMGMEGSRVRALY
QQKAQEYGVGWKGRQFTPGKFELSDLTNQVLTSTNAALYGILCSVVHAMGYSPHIGFIHSGSPLPFVYDLADLYKERLCI
DLAFSLSREMAGRYDKHKVSEAFRKRVIALDLLNLIAADINELMGGKGARRTGK

Specific function: Unknown

COG id: COG1518

COG function: function code L; Uncharacterized protein predicted to be involved in DNA repair

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1789113, Length=258, Percent_Identity=35.2713178294574, Blast_Score=174, Evalue=4e-45,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002729
- InterPro:   IPR019851 [H]

Pfam domain/function: PF01867 DUF48 [H]

EC number: NA

Molecular weight: Translated: 32364; Mature: 32364

Theoretical pI: Translated: 8.89; Mature: 8.89

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
5.1 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
5.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRLMAQGERLFVKVTRELLPQVKDKYPFLYLERGRLEIDDSSVKWVDADGNVVPLPVATI
CCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEECCEEEECCCCEEEECCCCCEEEECHHHH
NTLLLGPGTTVTHEAIKTATAANCAVCWVGEDSLLFYAAGFLPTADTRNLKAQMALACDA
HHEEECCCCCHHHHHHHHHCCCCEEEEEECCCCEEEEEECCCCCCCCCCCCEEEEEEECC
SSTLKVARAMFAKRFPDADLEGKSLNSMMGMEGSRVRALYQQKAQEYGVGWKGRQFTPGK
HHHHHHHHHHHHHHCCCCCCCCCHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCC
FELSDLTNQVLTSTNAALYGILCSVVHAMGYSPHIGFIHSGSPLPFVYDLADLYKERLCI
EEHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHH
DLAFSLSREMAGRYDKHKVSEAFRKRVIALDLLNLIAADINELMGGKGARRTGK
HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
>Mature Secondary Structure
MRLMAQGERLFVKVTRELLPQVKDKYPFLYLERGRLEIDDSSVKWVDADGNVVPLPVATI
CCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEECCEEEECCCCEEEECCCCCEEEECHHHH
NTLLLGPGTTVTHEAIKTATAANCAVCWVGEDSLLFYAAGFLPTADTRNLKAQMALACDA
HHEEECCCCCHHHHHHHHHCCCCEEEEEECCCCEEEEEECCCCCCCCCCCCEEEEEEECC
SSTLKVARAMFAKRFPDADLEGKSLNSMMGMEGSRVRALYQQKAQEYGVGWKGRQFTPGK
HHHHHHHHHHHHHHCCCCCCCCCHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCC
FELSDLTNQVLTSTNAALYGILCSVVHAMGYSPHIGFIHSGSPLPFVYDLADLYKERLCI
EEHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHH
DLAFSLSREMAGRYDKHKVSEAFRKRVIALDLLNLIAADINELMGGKGARRTGK
HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]