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The map label for this gene is ccmH [H]

Identifier: 238895110

GI number: 238895110

Start: 2988582

End: 2989040

Strand: Reverse

Name: ccmH [H]

Synonym: KP1_3149

Alternate gene names: 238895110

Gene position: 2989040-2988582 (Counterclockwise)

Preceding gene: 238895111

Following gene: 238895109

Centisome position: 56.95

GC content: 60.13

Gene sequence:

>459_bases
ATGAGACGTGTAATAGTCATCCTGCTGGCCCTGATGCTGACCGGCCAGACGTGGGCCGCCATCGATACCTGGCAGTTTAA
GGATGAGGCCCAGGAGCAGGCCTTCCGCGAGATCACCTCCCAACTGCGCTGCCCTAAATGCCAGAACAACAGCATCGCCG
ACTCAAACGCGATGATTGCCGCTGATATGCGGCAGAAGGTGTACGAGCTGATGCAGCAGGGTAAAACGAAAGGGCAGATC
GTTGACTATATGGTGGCCCGCTACGGTCATTTTGTCAGCTATGAGCCGCCGCTGACCGCGGGCACGGTGCTGCTGTGGCT
GGGACCGGGGTTGTTCGTGCTGGCGGGCGCGGGAGTAATTATCGCCCGCGCCCGCCGTCGCGACATTCCTGACGCGGCGC
TCAGCGCCGAAGAGCGCCAGCGGCTGGCGGCATTATTGAAAGAAGGAAAAGAACGATGA

Upstream 100 bases:

>100_bases
AGGGCATTATCCGCTGGCGGCACGCCGGCGACCTGAACGAACGGGTGTGGCGCGAGGAGCTCCAGCCGCTGTGGGATCAA
TACAACCGGAGGGCGGGCTG

Downstream 100 bases:

>100_bases
GCCTGTTGGTGGTTATCGTCGCGCTGCTGCTGGCTGGCGCGCTGGGGCTGCTGTACTTCCCGTGGTCGGGCAAAGGGGCG
GTAGACCGCGATGCTCTCAA

Product: putative subunit of heme lyase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 152; Mature: 152

Protein sequence:

>152_residues
MRRVIVILLALMLTGQTWAAIDTWQFKDEAQEQAFREITSQLRCPKCQNNSIADSNAMIAADMRQKVYELMQQGKTKGQI
VDYMVARYGHFVSYEPPLTAGTVLLWLGPGLFVLAGAGVIIARARRRDIPDAALSAEERQRLAALLKEGKER

Sequences:

>Translated_152_residues
MRRVIVILLALMLTGQTWAAIDTWQFKDEAQEQAFREITSQLRCPKCQNNSIADSNAMIAADMRQKVYELMQQGKTKGQI
VDYMVARYGHFVSYEPPLTAGTVLLWLGPGLFVLAGAGVIIARARRRDIPDAALSAEERQRLAALLKEGKER
>Mature_152_residues
MRRVIVILLALMLTGQTWAAIDTWQFKDEAQEQAFREITSQLRCPKCQNNSIADSNAMIAADMRQKVYELMQQGKTKGQI
VDYMVARYGHFVSYEPPLTAGTVLLWLGPGLFVLAGAGVIIARARRRDIPDAALSAEERQRLAALLKEGKER

Specific function: May be required for the biogenesis of c-type cytochromes. Possible subunit of a heme lyase [H]

COG id: COG3088

COG function: function code O; Uncharacterized protein involved in biosynthesis of c-type cytochromes

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 TPR repeats [H]

Homologues:

Organism=Escherichia coli, GI1788522, Length=120, Percent_Identity=65, Blast_Score=168, Evalue=1e-43,
Organism=Escherichia coli, GI1790512, Length=82, Percent_Identity=48.780487804878, Blast_Score=91, Evalue=3e-20,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005616
- InterPro:   IPR013026
- InterPro:   IPR011990
- InterPro:   IPR019734 [H]

Pfam domain/function: PF03918 CcmH [H]

EC number: NA

Molecular weight: Translated: 17051; Mature: 17051

Theoretical pI: Translated: 9.55; Mature: 9.55

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
3.9 %Met     (Translated Protein)
5.3 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
3.9 %Met     (Mature Protein)
5.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRRVIVILLALMLTGQTWAAIDTWQFKDEAQEQAFREITSQLRCPKCQNNSIADSNAMIA
CHHHHHHHHHHHHCCCCHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHH
ADMRQKVYELMQQGKTKGQIVDYMVARYGHFVSYEPPLTAGTVLLWLGPGLFVLAGAGVI
HHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCHHHHHHCCHHH
IARARRRDIPDAALSAEERQRLAALLKEGKER
HHHHHHCCCCHHHHCHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MRRVIVILLALMLTGQTWAAIDTWQFKDEAQEQAFREITSQLRCPKCQNNSIADSNAMIA
CHHHHHHHHHHHHCCCCHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHH
ADMRQKVYELMQQGKTKGQIVDYMVARYGHFVSYEPPLTAGTVLLWLGPGLFVLAGAGVI
HHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCHHHHHHCCHHH
IARARRRDIPDAALSAEERQRLAALLKEGKER
HHHHHHCCCCHHHHCHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9278503; 7635817 [H]