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The map label for this gene is ydhB [H]

Identifier: 238895041

GI number: 238895041

Start: 2925269

End: 2926273

Strand: Reverse

Name: ydhB [H]

Synonym: KP1_3072

Alternate gene names: 238895041

Gene position: 2926273-2925269 (Counterclockwise)

Preceding gene: 238895044

Following gene: 238895039

Centisome position: 55.75

GC content: 59.9

Gene sequence:

>1005_bases
ATGTGGTCTGAATACTCTCTGGAAGTGGTTGATGCCGTCGCCCGTAACGGCAGCTTCAGCGCGGCCGCGCAGGAGCTTCA
CCGGGTGCCTTCCGCGGTCAGCTATACCGTGCGTCAGCTCGAAGAGTGGCTCGCCGTTCCCTTATTTGAGCGTCGCCATC
GTGATGTGGAGTTGACCCCCGCCGGGGTCTGGTTTTTACAGGAAGGGCGCTCTGTTATCAAAAAAATGCAGATCACCCGC
CAGCAGTGTCAGCAAATTGCGAACGGCTGGCGCGGACAGTTGTCGATCGCAGTGGATGATATTGTGAAACCGGCGCGGAT
GCGTCAGATGATCGTCGATTTCTATCGCCATTTTCCCGACGTCGAACTGATCGTCTTTCAGGAAGTATTCAATGGCGTAT
GGGATGCGCTGGCCGACGGCCGCGTTGAGCTGGCGATTGGCGCAACGCGATCTATTCCGGTCGGCGGTCGCTATGCGTTC
CGCGATATGGGGATGCTGAGCTGGGACTGCGTGGTGGCGAGCGATCATCCGCTGGCAAAGATGGATGGACCCCTGAGCGA
CGACGTCCTGCGTAACTGGCCGTCGCTGGTGCGGGAGGATACCTCGCGCTCGTTGCCTAAACGGACAACATGGTTGCTGG
ATAACCAGAAGAGGGTAGTCGTCCCTGACTGGGAATCATCAGCAACCTGTTTGTCGGCAGGACTCTGCGTCGGCATGGTG
CCGAGCCATTTCGCCCGTCCATGGATAGATCGCGGCGAGTGGACTGCGCTGGCGCTGGAAAATCCGTTCCCGGATGCCGC
CTGCTGCCTGACGTGGCAGCAGAACGATGCCTCACCGGCGCTGAACTGGATGCTTGACTATCTGGGGGACAGCGACACGC
TGAATCGGGAGTGGCTGCGGGCGCCGGAGAGATCCGCGCCCGCCAGATGCCTTAACGACGATAATCGACAAACGGGCCAT
CCGCTACCGAGCGGCGCTCAACCAGACGAGGGTGCACTTCGATAG

Upstream 100 bases:

>100_bases
GTTGGTGTACAGGTACGATGCCGCAGAGTGTAGGGAGTGCATTGTGGCTTGTGAAACGCTAATATTTGTCACATGCATTC
AAAAATTTTGCAGGCAGAAA

Downstream 100 bases:

>100_bases
ACTGCGACTCTTCACGCTTGTTGACGATACGATCCAACAGCATGTTAAATGCGGCCTCGCCCAGGGAATCTTTCGGCTGA
TGAATGGTGGTTAACGCCGG

Product: putative DNA-binding transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 334; Mature: 334

Protein sequence:

>334_residues
MWSEYSLEVVDAVARNGSFSAAAQELHRVPSAVSYTVRQLEEWLAVPLFERRHRDVELTPAGVWFLQEGRSVIKKMQITR
QQCQQIANGWRGQLSIAVDDIVKPARMRQMIVDFYRHFPDVELIVFQEVFNGVWDALADGRVELAIGATRSIPVGGRYAF
RDMGMLSWDCVVASDHPLAKMDGPLSDDVLRNWPSLVREDTSRSLPKRTTWLLDNQKRVVVPDWESSATCLSAGLCVGMV
PSHFARPWIDRGEWTALALENPFPDAACCLTWQQNDASPALNWMLDYLGDSDTLNREWLRAPERSAPARCLNDDNRQTGH
PLPSGAQPDEGALR

Sequences:

>Translated_334_residues
MWSEYSLEVVDAVARNGSFSAAAQELHRVPSAVSYTVRQLEEWLAVPLFERRHRDVELTPAGVWFLQEGRSVIKKMQITR
QQCQQIANGWRGQLSIAVDDIVKPARMRQMIVDFYRHFPDVELIVFQEVFNGVWDALADGRVELAIGATRSIPVGGRYAF
RDMGMLSWDCVVASDHPLAKMDGPLSDDVLRNWPSLVREDTSRSLPKRTTWLLDNQKRVVVPDWESSATCLSAGLCVGMV
PSHFARPWIDRGEWTALALENPFPDAACCLTWQQNDASPALNWMLDYLGDSDTLNREWLRAPERSAPARCLNDDNRQTGH
PLPSGAQPDEGALR
>Mature_334_residues
MWSEYSLEVVDAVARNGSFSAAAQELHRVPSAVSYTVRQLEEWLAVPLFERRHRDVELTPAGVWFLQEGRSVIKKMQITR
QQCQQIANGWRGQLSIAVDDIVKPARMRQMIVDFYRHFPDVELIVFQEVFNGVWDALADGRVELAIGATRSIPVGGRYAF
RDMGMLSWDCVVASDHPLAKMDGPLSDDVLRNWPSLVREDTSRSLPKRTTWLLDNQKRVVVPDWESSATCLSAGLCVGMV
PSHFARPWIDRGEWTALALENPFPDAACCLTWQQNDASPALNWMLDYLGDSDTLNREWLRAPERSAPARCLNDDNRQTGH
PLPSGAQPDEGALR

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1787949, Length=305, Percent_Identity=86.8852459016393, Blast_Score=565, Evalue=1e-162,
Organism=Escherichia coli, GI1786508, Length=285, Percent_Identity=29.4736842105263, Blast_Score=174, Evalue=7e-45,
Organism=Escherichia coli, GI1786713, Length=282, Percent_Identity=30.1418439716312, Blast_Score=158, Evalue=5e-40,
Organism=Escherichia coli, GI87082024, Length=246, Percent_Identity=31.7073170731707, Blast_Score=151, Evalue=6e-38,
Organism=Escherichia coli, GI1789492, Length=280, Percent_Identity=30.7142857142857, Blast_Score=129, Evalue=2e-31,
Organism=Escherichia coli, GI157672245, Length=168, Percent_Identity=32.7380952380952, Blast_Score=75, Evalue=8e-15,
Organism=Escherichia coli, GI1789506, Length=142, Percent_Identity=28.169014084507, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI1787601, Length=165, Percent_Identity=24.8484848484848, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI1790399, Length=173, Percent_Identity=26.0115606936416, Blast_Score=65, Evalue=5e-12,
Organism=Escherichia coli, GI1787806, Length=162, Percent_Identity=26.5432098765432, Blast_Score=65, Evalue=6e-12,
Organism=Escherichia coli, GI1789204, Length=239, Percent_Identity=25.1046025104602, Blast_Score=63, Evalue=3e-11,
Organism=Escherichia coli, GI1788706, Length=128, Percent_Identity=32.03125, Blast_Score=63, Evalue=3e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 37701; Mature: 37701

Theoretical pI: Translated: 5.10; Mature: 5.10

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.1 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
4.8 %Cys+Met (Translated Protein)
2.1 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
4.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MWSEYSLEVVDAVARNGSFSAAAQELHRVPSAVSYTVRQLEEWLAVPLFERRHRDVELTP
CCCCHHHHHHHHHHCCCCHHHHHHHHHHCHHHHHHHHHHHHHHHHCHHHHHCCCCEEECC
AGVWFLQEGRSVIKKMQITRQQCQQIANGWRGQLSIAVDDIVKPARMRQMIVDFYRHFPD
CHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEHHHHHCHHHHHHHHHHHHHHCCC
VELIVFQEVFNGVWDALADGRVELAIGATRSIPVGGRYAFRDMGMLSWDCVVASDHPLAK
CEEEHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCHHHHHCCCEEEEEEEECCCCHHH
MDGPLSDDVLRNWPSLVREDTSRSLPKRTTWLLDNQKRVVVPDWESSATCLSAGLCVGMV
CCCCCCHHHHHHHHHHHHHHHHHCCCCHHEEEECCCCEEEECCCCCCHHHHHHHHHHHCC
PSHFARPWIDRGEWTALALENPFPDAACCLTWQQNDASPALNWMLDYLGDSDTLNREWLR
HHHHCCCCCCCCCEEEEEECCCCCCCEEEEEECCCCCCHHHHHHHHHHCCCCCCCHHHHC
APERSAPARCLNDDNRQTGHPLPSGAQPDEGALR
CCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MWSEYSLEVVDAVARNGSFSAAAQELHRVPSAVSYTVRQLEEWLAVPLFERRHRDVELTP
CCCCHHHHHHHHHHCCCCHHHHHHHHHHCHHHHHHHHHHHHHHHHCHHHHHCCCCEEECC
AGVWFLQEGRSVIKKMQITRQQCQQIANGWRGQLSIAVDDIVKPARMRQMIVDFYRHFPD
CHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEHHHHHCHHHHHHHHHHHHHHCCC
VELIVFQEVFNGVWDALADGRVELAIGATRSIPVGGRYAFRDMGMLSWDCVVASDHPLAK
CEEEHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCHHHHHCCCEEEEEEEECCCCHHH
MDGPLSDDVLRNWPSLVREDTSRSLPKRTTWLLDNQKRVVVPDWESSATCLSAGLCVGMV
CCCCCCHHHHHHHHHHHHHHHHHCCCCHHEEEECCCCEEEECCCCCCHHHHHHHHHHHCC
PSHFARPWIDRGEWTALALENPFPDAACCLTWQQNDASPALNWMLDYLGDSDTLNREWLR
HHHHCCCCCCCCCEEEEEECCCCCCCEEEEEECCCCCCHHHHHHHHHHCCCCCCCHHHHC
APERSAPARCLNDDNRQTGHPLPSGAQPDEGALR
CCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]