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The map label for this gene is soxS [H]

Identifier: 238895037

GI number: 238895037

Start: 2921000

End: 2921530

Strand: Reverse

Name: soxS [H]

Synonym: KP1_3067

Alternate gene names: 238895037

Gene position: 2921530-2921000 (Counterclockwise)

Preceding gene: 238895039

Following gene: 238895035

Centisome position: 55.66

GC content: 55.93

Gene sequence:

>531_bases
ATGACAAATATAGCCGCCAGCAGTAATTTCCCCAGGATGACGACGATGGCAAAAACAGATGAGGTGGTGAGCGCGAAAAT
GATCCCGGTGGTGCAGGGGATTGTTGACTGGATCGAAGCACATATTTTCGACACCCTGTCGGTGAGCGCGATTGCGAAAA
AGTCCGGCTACTCACACTGGTACTTCCAGCGACAATTCGCCATGGTAACGGGCTGCACGCTGGCGAGCTACGTCAGCCGA
CGAAAGATGACGATTGCGACAATCTATTTAACGCAGACGCAGGCGTCGATACAGAGTATTTCTCAGTGCCTGGGATACGA
GGGACAAGCCGCTTTCTGCCGGACCTTTCACCGTCACTTTGGCATGTCGCCGACCCGCTATCGTCGTGATACGCCGGGCA
AAGAGAGCAATCTGCAATATCCCTTGCGGGTGGGGATGGAGATCGAGCAGGAGAGGCGGTCTGCCGCCGCAGCGGCAGAC
CGGGATCAGCGAATGGTTTTCGGCGTCATGACGCGACGAGCGCCGACATAA

Upstream 100 bases:

>100_bases
CTGAATAAAAAATAAAACTTTAATATCAAACGATTAATAAAAACATGCGCTCAGGCAATCGTCGCTATGCCAATAATTCA
TTGTCTATTTTTTAATTTGT

Downstream 100 bases:

>100_bases
TGGCGAACCCAGTAATCCTCGCTCAGGGAGGTGATTTGAATATCACGACCTGTGCGCGGCGACTGAATGAATTTTCCGTT
GCCGACGTAGACGCCGACAT

Product: regulatory protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 176; Mature: 175

Protein sequence:

>176_residues
MTNIAASSNFPRMTTMAKTDEVVSAKMIPVVQGIVDWIEAHIFDTLSVSAIAKKSGYSHWYFQRQFAMVTGCTLASYVSR
RKMTIATIYLTQTQASIQSISQCLGYEGQAAFCRTFHRHFGMSPTRYRRDTPGKESNLQYPLRVGMEIEQERRSAAAAAD
RDQRMVFGVMTRRAPT

Sequences:

>Translated_176_residues
MTNIAASSNFPRMTTMAKTDEVVSAKMIPVVQGIVDWIEAHIFDTLSVSAIAKKSGYSHWYFQRQFAMVTGCTLASYVSR
RKMTIATIYLTQTQASIQSISQCLGYEGQAAFCRTFHRHFGMSPTRYRRDTPGKESNLQYPLRVGMEIEQERRSAAAAAD
RDQRMVFGVMTRRAPT
>Mature_175_residues
TNIAASSNFPRMTTMAKTDEVVSAKMIPVVQGIVDWIEAHIFDTLSVSAIAKKSGYSHWYFQRQFAMVTGCTLASYVSRR
KMTIATIYLTQTQASIQSISQCLGYEGQAAFCRTFHRHFGMSPTRYRRDTPGKESNLQYPLRVGMEIEQERRSAAAAADR
DQRMVFGVMTRRAPT

Specific function: Transcriptional activator of the superoxide response regulon of E.coli that includes at least 10 genes such as sodA, nfo, zwf and micF. Binds the DNA sequence 5'-GCACN(7)CAA-3'. It also facilitates the subsequent binding of RNA polymerase to the micF and

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm (Probable) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1790497, Length=99, Percent_Identity=41.4141414141414, Blast_Score=94, Evalue=7e-21,
Organism=Escherichia coli, GI87081928, Length=113, Percent_Identity=34.5132743362832, Blast_Score=85, Evalue=2e-18,
Organism=Escherichia coli, GI1790857, Length=116, Percent_Identity=31.0344827586207, Blast_Score=80, Evalue=6e-17,

Paralogues:

None

Copy number: 2500 (L-broth) [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR018062
- InterPro:   IPR020449
- InterPro:   IPR018060 [H]

Pfam domain/function: PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 19879; Mature: 19748

Theoretical pI: Translated: 10.18; Mature: 10.18

Prosite motif: PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
5.7 %Met     (Translated Protein)
7.4 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
5.1 %Met     (Mature Protein)
6.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTNIAASSNFPRMTTMAKTDEVVSAKMIPVVQGIVDWIEAHIFDTLSVSAIAKKSGYSHW
CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCH
YFQRQFAMVTGCTLASYVSRRKMTIATIYLTQTQASIQSISQCLGYEGQAAFCRTFHRHF
HHHHHHHHHHHHHHHHHHHHCCEEEEEEEEECHHHHHHHHHHHHCCCCCHHHHHHHHHHH
GMSPTRYRRDTPGKESNLQYPLRVGMEIEQERRSAAAAADRDQRMVFGVMTRRAPT
CCCCHHCCCCCCCCCCCCCCHHEECCCHHHHHHHHHHHCCCCHHHHHHHHHCCCCC
>Mature Secondary Structure 
TNIAASSNFPRMTTMAKTDEVVSAKMIPVVQGIVDWIEAHIFDTLSVSAIAKKSGYSHW
CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCH
YFQRQFAMVTGCTLASYVSRRKMTIATIYLTQTQASIQSISQCLGYEGQAAFCRTFHRHF
HHHHHHHHHHHHHHHHHHHHCCEEEEEEEEECHHHHHHHHHHHHCCCCCHHHHHHHHHHH
GMSPTRYRRDTPGKESNLQYPLRVGMEIEQERRSAAAAADRDQRMVFGVMTRRAPT
CCCCHHCCCCCCCCCCCCCCHHEECCCHHHHHHHHHHHCCCCHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]