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The map label for this gene is ydhM [H]

Identifier: 238895031

GI number: 238895031

Start: 2916417

End: 2917016

Strand: Direct

Name: ydhM [H]

Synonym: KP1_3061

Alternate gene names: 238895031

Gene position: 2916417-2917016 (Clockwise)

Preceding gene: 238895027

Following gene: 238895032

Centisome position: 55.57

GC content: 58.17

Gene sequence:

>600_bases
ATGAACAGACACAGCGATTGCGATACCCGAGAACATATCCTGGCCACCGGCGAGCAGCTTTGCATGCATCGCGGTTTTAC
CGGAATGGGCTTGAGCGAACTTCTGAAGACGGCGGAGGTGCCCAAGGGCTCCTTCTACCACTACTTTCGCTCTAAGGAAG
CCTTCGGCGTCGCGCTGCTTGAACATCACTACACCGGATATCTGCAGCGCCTGGTCGACCACTTCGATCATGGCGACGGT
AACTATCGCGATCGCCTGCTGGCCTACTATCAGCACACGCTGAATCAGTTCTGCCAGCAGGGGATTATTAGCGGGTGTCT
TACTGTCAAGCTATCCGCGGAGGTTTGCGATCTGTCGGAAGATATGCGCGCCGCCATGGATCGCGGAGCCAGCCAGATTA
TCGCCCTGCTGGGCGACGCGCTGGAGAAAGGACGTCAGGAAGGCAGTCTCGCATTTGACGGCGAGGCCATGACCCTGTCG
CAGGTGCTGTATTCCCTGTGGCTCGGGGCCAACCTGCAGGCCAAAATTACGCGTAGCGCAACGCCGCTGGAAAGCGCCCT
TGCCCACGCCAAACAGATTATTGCGGCGCCTGCGGTATAA

Upstream 100 bases:

>100_bases
TCCCCGCGCCGACGCAAATTTTGTTCACTACGTGCTGCGCCAGCTAACATTTTTCCGCCGACGCTTGCATTAGACCAATC
GGTCTACTACAGTGTGCAGC

Downstream 100 bases:

>100_bases
CAGGCGTTTTTATTTCATCAGTTACTAGACGACCGGTCTACTCAGGAGTCACTATGTCGGAAGCAAAATTATTCAGCCCA
CTGAAAGTCGGTGCGGTCAC

Product: hypothetical transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 199; Mature: 199

Protein sequence:

>199_residues
MNRHSDCDTREHILATGEQLCMHRGFTGMGLSELLKTAEVPKGSFYHYFRSKEAFGVALLEHHYTGYLQRLVDHFDHGDG
NYRDRLLAYYQHTLNQFCQQGIISGCLTVKLSAEVCDLSEDMRAAMDRGASQIIALLGDALEKGRQEGSLAFDGEAMTLS
QVLYSLWLGANLQAKITRSATPLESALAHAKQIIAAPAV

Sequences:

>Translated_199_residues
MNRHSDCDTREHILATGEQLCMHRGFTGMGLSELLKTAEVPKGSFYHYFRSKEAFGVALLEHHYTGYLQRLVDHFDHGDG
NYRDRLLAYYQHTLNQFCQQGIISGCLTVKLSAEVCDLSEDMRAAMDRGASQIIALLGDALEKGRQEGSLAFDGEAMTLS
QVLYSLWLGANLQAKITRSATPLESALAHAKQIIAAPAV
>Mature_199_residues
MNRHSDCDTREHILATGEQLCMHRGFTGMGLSELLKTAEVPKGSFYHYFRSKEAFGVALLEHHYTGYLQRLVDHFDHGDG
NYRDRLLAYYQHTLNQFCQQGIISGCLTVKLSAEVCDLSEDMRAAMDRGASQIIALLGDALEKGRQEGSLAFDGEAMTLS
QVLYSLWLGANLQAKITRSATPLESALAHAKQIIAAPAV

Specific function: Represses the transcription of the nemRA operon by binding to the nemR box [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH tetR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI145693141, Length=199, Percent_Identity=74.8743718592965, Blast_Score=313, Evalue=4e-87,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR015893
- InterPro:   IPR011075
- InterPro:   IPR001647 [H]

Pfam domain/function: PF00440 TetR_N [H]

EC number: NA

Molecular weight: Translated: 22020; Mature: 22020

Theoretical pI: Translated: 6.50; Mature: 6.50

Prosite motif: PS50977 HTH_TETR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.5 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
5.5 %Cys+Met (Translated Protein)
2.5 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
5.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNRHSDCDTREHILATGEQLCMHRGFTGMGLSELLKTAEVPKGSFYHYFRSKEAFGVALL
CCCCCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCHHHHHHHCCHHHHHHHH
EHHYTGYLQRLVDHFDHGDGNYRDRLLAYYQHTLNQFCQQGIISGCLTVKLSAEVCDLSE
HHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECHHHHCCHH
DMRAAMDRGASQIIALLGDALEKGRQEGSLAFDGEAMTLSQVLYSLWLGANLQAKITRSA
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEECCCHHHHHHHHHHHHHCCCCCEECCCCC
TPLESALAHAKQIIAAPAV
CCHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MNRHSDCDTREHILATGEQLCMHRGFTGMGLSELLKTAEVPKGSFYHYFRSKEAFGVALL
CCCCCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCHHHHHHHCCHHHHHHHH
EHHYTGYLQRLVDHFDHGDGNYRDRLLAYYQHTLNQFCQQGIISGCLTVKLSAEVCDLSE
HHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECHHHHCCHH
DMRAAMDRGASQIIALLGDALEKGRQEGSLAFDGEAMTLSQVLYSLWLGANLQAKITRSA
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEECCCHHHHHHHHHHHHHCCCCCEECCCCC
TPLESALAHAKQIIAAPAV
CCHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12471157 [H]