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The map label for this gene is cydA [H]

Identifier: 238894970

GI number: 238894970

Start: 2858264

End: 2859661

Strand: Direct

Name: cydA [H]

Synonym: KP1_2996

Alternate gene names: 238894970

Gene position: 2858264-2859661 (Clockwise)

Preceding gene: 238894962

Following gene: 238894971

Centisome position: 54.46

GC content: 59.51

Gene sequence:

>1398_bases
ATGTTCGGTCTTGATGCATTCCATCTGGCGCGAGTTCAATTCGCTTTTACGGTCTCATTTCATATTATCTTCCCCGCCAT
TACCATCGGACTGGCCAGCTATCTGGCGGTGCTCGAAGGCTTATGGCTAAAAACAAAAAATCCCGTCTGGCGCTCGCTGT
ACCATTTCTGGTCGAAGATTTTCGCCGTCAACTTCGGTATGGGGGTCGTTTCCGGGCTGGTGATGGCCTACCAGTTCGGC
ACCAACTGGAGCGGTTTCTCACAGTTTGCAGGCAGCATAACCGGCCCTCTGCTGACCTATGAAGTCCTGACGGCATTTTT
TCTGGAAGCGGGCTTCCTCGGGGTGATGCTTTTCGGCTGGAACCGCGTGGGGCCGGGGCTACACTTTTTCGCCACCTGCA
TGGTGGCGCTGGGTACTATCATCTCCACCTTCTGGATCCTCGCCTCTAACAGCTGGATGCAGACCCCGCAGGGGTTTGAG
ATCGTTGATGGCCAGGTCGTGCCCGTCGACTGGCTGGCGGTGATCTTTAATCCGTCGTTCCCCTACCGATTATTGCATAT
GACAGTAGCGGCATTTCTCAGTAGCGCGCTGTTTGTCGGCGCCTCGGCGGCCTGGCATCTGCTGCGCGGCAATCAGTCGC
CGGCGATCCGTAAGATGTTCTCGATGGCGCTATGGATGACGCTGCTGGTCGCCCCCGTCCAGGCGCTGATCGGCGATATG
CATGGCCTGAATACCCTGAAGCACCAGCCGGCGAAAATCGCCGCCATTGAGGGGCACTGGGAAAATCCGCCGGGTGAGCC
AACGCCGTTGCTGCTGTTTGGCTGGCCCGATATGGACCAGGAGCGCACCCGCTACGGGCTTGAGATACCGGCCCTGGGCA
GTCTGATCCTCACCCACAGTCTTGATAAACAGGTGCCGGCGTTGAAAGAGTTCGCTCCTGAGGAGCGCCCGAATTCTACT
GTGGTGTTCTGGTCATTTCGCCTGATGGCCGGGCTGGGCATGTTGATGCTGCTGCTGGGCGTGCTGGCCCTGTGGCTGCG
TCGCGGCGACCGGCTATACCACTCGCGGCCGTTTCTGCGTTTTGCCCTGTGGATGGGGCCATCCGGCCTGATCGCTATTC
TCGCCGGCTGGGTGACCACCGAGGTGGGCCGCCAACCCTGGGTGGTGTATGGCGTTCAGCGCACCGCCGATGCCGTTTCC
GCTCATGGCGATCTGCATATGTCGGTCAGTTTATTGACCTTTATCGTAGTGTACAGCGCCGTCTTCGGCGTCGGCTACAG
CTATATGCTGCGCCTGATCCGCAAGGGGCCGCAGGAGATGCTCCCGGCGACAACCGGTACGCCAGCCCGCCCGCTGTCCG
CCGCCACTGAAGGTTATCTGCAGAAGGAGTCCCGCTAA

Upstream 100 bases:

>100_bases
GCGGCCAACTGTTATGATAAAAAATGGCGTGACTGCCTCTGCCCCTCAGTCGTCACCCCACCTAAAATTGCGCTGAATCA
ATTTTGTTGTGGAGTCCTGC

Downstream 100 bases:

>100_bases
TGGGTATCGAATTATCGGTGATCTGGTTCGTGATTATCGTCTTTGCCACGCTGATGTACATCGTCATGGATGGCTTTGAT
CTGGGCATCGGCCTGCTGTT

Product: cytochrome bd ubiquinol oxidase subunit I

Products: NA

Alternate protein names: Cytochrome d ubiquinol oxidase subunit I [H]

Number of amino acids: Translated: 465; Mature: 465

Protein sequence:

>465_residues
MFGLDAFHLARVQFAFTVSFHIIFPAITIGLASYLAVLEGLWLKTKNPVWRSLYHFWSKIFAVNFGMGVVSGLVMAYQFG
TNWSGFSQFAGSITGPLLTYEVLTAFFLEAGFLGVMLFGWNRVGPGLHFFATCMVALGTIISTFWILASNSWMQTPQGFE
IVDGQVVPVDWLAVIFNPSFPYRLLHMTVAAFLSSALFVGASAAWHLLRGNQSPAIRKMFSMALWMTLLVAPVQALIGDM
HGLNTLKHQPAKIAAIEGHWENPPGEPTPLLLFGWPDMDQERTRYGLEIPALGSLILTHSLDKQVPALKEFAPEERPNST
VVFWSFRLMAGLGMLMLLLGVLALWLRRGDRLYHSRPFLRFALWMGPSGLIAILAGWVTTEVGRQPWVVYGVQRTADAVS
AHGDLHMSVSLLTFIVVYSAVFGVGYSYMLRLIRKGPQEMLPATTGTPARPLSAATEGYLQKESR

Sequences:

>Translated_465_residues
MFGLDAFHLARVQFAFTVSFHIIFPAITIGLASYLAVLEGLWLKTKNPVWRSLYHFWSKIFAVNFGMGVVSGLVMAYQFG
TNWSGFSQFAGSITGPLLTYEVLTAFFLEAGFLGVMLFGWNRVGPGLHFFATCMVALGTIISTFWILASNSWMQTPQGFE
IVDGQVVPVDWLAVIFNPSFPYRLLHMTVAAFLSSALFVGASAAWHLLRGNQSPAIRKMFSMALWMTLLVAPVQALIGDM
HGLNTLKHQPAKIAAIEGHWENPPGEPTPLLLFGWPDMDQERTRYGLEIPALGSLILTHSLDKQVPALKEFAPEERPNST
VVFWSFRLMAGLGMLMLLLGVLALWLRRGDRLYHSRPFLRFALWMGPSGLIAILAGWVTTEVGRQPWVVYGVQRTADAVS
AHGDLHMSVSLLTFIVVYSAVFGVGYSYMLRLIRKGPQEMLPATTGTPARPLSAATEGYLQKESR
>Mature_465_residues
MFGLDAFHLARVQFAFTVSFHIIFPAITIGLASYLAVLEGLWLKTKNPVWRSLYHFWSKIFAVNFGMGVVSGLVMAYQFG
TNWSGFSQFAGSITGPLLTYEVLTAFFLEAGFLGVMLFGWNRVGPGLHFFATCMVALGTIISTFWILASNSWMQTPQGFE
IVDGQVVPVDWLAVIFNPSFPYRLLHMTVAAFLSSALFVGASAAWHLLRGNQSPAIRKMFSMALWMTLLVAPVQALIGDM
HGLNTLKHQPAKIAAIEGHWENPPGEPTPLLLFGWPDMDQERTRYGLEIPALGSLILTHSLDKQVPALKEFAPEERPNST
VVFWSFRLMAGLGMLMLLLGVLALWLRRGDRLYHSRPFLRFALWMGPSGLIAILAGWVTTEVGRQPWVVYGVQRTADAVS
AHGDLHMSVSLLTFIVVYSAVFGVGYSYMLRLIRKGPQEMLPATTGTPARPLSAATEGYLQKESR

Specific function: Cytochrome Oxidase Subunit. [C]

COG id: COG1271

COG function: function code C; Cytochrome bd-type quinol oxidase, subunit 1

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the cytochrome ubiquinol oxidase subunit 1 family [H]

Homologues:

Organism=Escherichia coli, GI1787212, Length=316, Percent_Identity=38.6075949367089, Blast_Score=243, Evalue=2e-65,
Organism=Escherichia coli, GI87081779, Length=524, Percent_Identity=29.7709923664122, Blast_Score=237, Evalue=1e-63,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002585 [H]

Pfam domain/function: PF01654 Bac_Ubq_Cox [H]

EC number: 1.10.3.-

Molecular weight: Translated: 51567; Mature: 51567

Theoretical pI: Translated: 9.55; Mature: 9.55

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
4.1 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
4.1 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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HHHCCHHHHHHHHHHCHHHHCCCCCCCCCCCCHHHHHHHHHCCCC
>Mature Secondary Structure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HHHCCHHHHHHHHHHCHHHHCCCCCCCCCCCCHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: Fe [C]

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: Oxidoreductases; Acting on diphenols and related substances as donors; With oxygen as acceptor [C]

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8969509; 9384377 [H]