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The map label for this gene is cydB [H]

Identifier: 238894971

GI number: 238894971

Start: 2859661

End: 2860671

Strand: Direct

Name: cydB [H]

Synonym: KP1_2997

Alternate gene names: 238894971

Gene position: 2859661-2860671 (Clockwise)

Preceding gene: 238894970

Following gene: 238894972

Centisome position: 54.49

GC content: 61.82

Gene sequence:

>1011_bases
ATGGGTATCGAATTATCGGTGATCTGGTTCGTGATTATCGTCTTTGCCACGCTGATGTACATCGTCATGGATGGCTTTGA
TCTGGGCATCGGCCTGCTGTTCAGCACGGTGCGGGGCGGCGGGGATCGCGACGTAATGGTCAACAGCGTCGCGCCGGTAT
GGGATGGCAATGAAACCTGGCTGGTGCTCGGCGGCGCCGGCCTGTTTGGCGCCTTTCCTCTCGCCTACGCGGTGATCATC
GACGCCCTGTCGATCCCCCTGACCCTGATGCTGATCGGCCTGATTTTTCGCGGCGTCGCCTTTGAGTTTCGCTTCCAGGC
CACGCCATCGCACCGGCCATTCTGGGATCGCGCCTTTTTTGGCGGCTCCCTGCTGGCAACCTTCAGCCAGGGCGTGGTGG
TCGGGGCGGTGATCAACGGTTTCACCGTCAGCGGTCGCGCCTTCAGCGGCGGCATGTTTGACTGGCTGACCCCGTTCAGC
CTGTTCTGCGGATTCGGACTATGCGTGGCCTATGCGCTGCTCGGCGCCACCTGGCTGGTGATGAAAAGTGAAGGCGCGCT
GCAGCAGAGAATGCGCAGCGCATCGCGGCAGTTGCTGGGTGCCCTGCTGGCGGTGTTTGCCGTCATCAGCCTGTGGACTC
CGCTGGCGCACCCGGCGATTGCTGCCCGCTGGTTCAGCCTGCCGAATCTCTATTTCCTGCTGCCGGTACCGCTGCTGGTG
ATCCTCGTTAGCGGCTGGCTGTGGAGCACGCTGCATCAGCGCGACCGCCATGTTTCGCCCTTCACGCTGACGCTGGGCCT
GGTCTTTCTCGGCTTCAGCGGACTAGGGATCAGCATCTGGCCGCATATTATCCCGCCGGCCATCACATTGTGGCAGGCTG
CCGCTCCCCCGCAAAGCCAGGGCTTTATGCTGGTGGGCGCCCTGCTGATTATTCCGGTCATTCTTGGCTACACCTGCTGG
AGCTATTACGTGTTCCGCGGCAAAGTTCAGCCTGGGGAGGGATATCACTGA

Upstream 100 bases:

>100_bases
TCCGCAAGGGGCCGCAGGAGATGCTCCCGGCGACAACCGGTACGCCAGCCCGCCCGCTGTCCGCCGCCACTGAAGGTTAT
CTGCAGAAGGAGTCCCGCTA

Downstream 100 bases:

>100_bases
TGCGTACTGCCTGGCCTAAACGTCTGCTGTGGCTGATCGCGCTCTGGGGAGGCAGCGTACTGACGCTGGCCGCCATAAGC
CTGCTGTTTCGCCTGCTGAT

Product: cytochrome d ubiquinol oxidase subunit II

Products: NA

Alternate protein names: Cytochrome bd-I oxidase subunit II; Cytochrome d ubiquinol oxidase subunit II [H]

Number of amino acids: Translated: 336; Mature: 335

Protein sequence:

>336_residues
MGIELSVIWFVIIVFATLMYIVMDGFDLGIGLLFSTVRGGGDRDVMVNSVAPVWDGNETWLVLGGAGLFGAFPLAYAVII
DALSIPLTLMLIGLIFRGVAFEFRFQATPSHRPFWDRAFFGGSLLATFSQGVVVGAVINGFTVSGRAFSGGMFDWLTPFS
LFCGFGLCVAYALLGATWLVMKSEGALQQRMRSASRQLLGALLAVFAVISLWTPLAHPAIAARWFSLPNLYFLLPVPLLV
ILVSGWLWSTLHQRDRHVSPFTLTLGLVFLGFSGLGISIWPHIIPPAITLWQAAAPPQSQGFMLVGALLIIPVILGYTCW
SYYVFRGKVQPGEGYH

Sequences:

>Translated_336_residues
MGIELSVIWFVIIVFATLMYIVMDGFDLGIGLLFSTVRGGGDRDVMVNSVAPVWDGNETWLVLGGAGLFGAFPLAYAVII
DALSIPLTLMLIGLIFRGVAFEFRFQATPSHRPFWDRAFFGGSLLATFSQGVVVGAVINGFTVSGRAFSGGMFDWLTPFS
LFCGFGLCVAYALLGATWLVMKSEGALQQRMRSASRQLLGALLAVFAVISLWTPLAHPAIAARWFSLPNLYFLLPVPLLV
ILVSGWLWSTLHQRDRHVSPFTLTLGLVFLGFSGLGISIWPHIIPPAITLWQAAAPPQSQGFMLVGALLIIPVILGYTCW
SYYVFRGKVQPGEGYH
>Mature_335_residues
GIELSVIWFVIIVFATLMYIVMDGFDLGIGLLFSTVRGGGDRDVMVNSVAPVWDGNETWLVLGGAGLFGAFPLAYAVIID
ALSIPLTLMLIGLIFRGVAFEFRFQATPSHRPFWDRAFFGGSLLATFSQGVVVGAVINGFTVSGRAFSGGMFDWLTPFSL
FCGFGLCVAYALLGATWLVMKSEGALQQRMRSASRQLLGALLAVFAVISLWTPLAHPAIAARWFSLPNLYFLLPVPLLVI
LVSGWLWSTLHQRDRHVSPFTLTLGLVFLGFSGLGISIWPHIIPPAITLWQAAAPPQSQGFMLVGALLIIPVILGYTCWS
YYVFRGKVQPGEGYH

Specific function: Cytochrome d terminal oxidase complex is the component of the aerobic respiratory chain that predominates when cells are grown at low aeration [H]

COG id: COG1294

COG function: function code C; Cytochrome bd-type quinol oxidase, subunit 2

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: To E.coli AppB [H]

Homologues:

Organism=Escherichia coli, GI1786954, Length=369, Percent_Identity=28.4552845528455, Blast_Score=133, Evalue=2e-32,
Organism=Escherichia coli, GI1787213, Length=362, Percent_Identity=28.7292817679558, Blast_Score=126, Evalue=2e-30,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003317 [H]

Pfam domain/function: PF02322 Cyto_ox_2 [H]

EC number: 1.10.3.-

Molecular weight: Translated: 36627; Mature: 36496

Theoretical pI: Translated: 8.47; Mature: 8.47

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGIELSVIWFVIIVFATLMYIVMDGFDLGIGLLFSTVRGGGDRDVMVNSVAPVWDGNETW
CCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCEEEECCCCCCCCCCEE
LVLGGAGLFGAFPLAYAVIIDALSIPLTLMLIGLIFRGVAFEFRFQATPSHRPFWDRAFF
EEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEECCCCCCCCHHHHHH
GGSLLATFSQGVVVGAVINGFTVSGRAFSGGMFDWLTPFSLFCGFGLCVAYALLGATWLV
CCHHHHHHHCCEEEEEECCCEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHEE
MKSEGALQQRMRSASRQLLGALLAVFAVISLWTPLAHPAIAARWFSLPNLYFLLPVPLLV
EECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCHHHHHHHHHHH
ILVSGWLWSTLHQRDRHVSPFTLTLGLVFLGFSGLGISIWPHIIPPAITLWQAAAPPQSQ
HHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCHHHCHHHCCCHHHHHHCCCCCCCC
GFMLVGALLIIPVILGYTCWSYYVFRGKVQPGEGYH
CHHHHHHHHHHHHHHHHHHHHHHHEECEECCCCCCC
>Mature Secondary Structure 
GIELSVIWFVIIVFATLMYIVMDGFDLGIGLLFSTVRGGGDRDVMVNSVAPVWDGNETW
CCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCEEEECCCCCCCCCCEE
LVLGGAGLFGAFPLAYAVIIDALSIPLTLMLIGLIFRGVAFEFRFQATPSHRPFWDRAFF
EEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEECCCCCCCCHHHHHH
GGSLLATFSQGVVVGAVINGFTVSGRAFSGGMFDWLTPFSLFCGFGLCVAYALLGATWLV
CCHHHHHHHCCEEEEEECCCEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHEE
MKSEGALQQRMRSASRQLLGALLAVFAVISLWTPLAHPAIAARWFSLPNLYFLLPVPLLV
EECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCHHHHHHHHHHH
ILVSGWLWSTLHQRDRHVSPFTLTLGLVFLGFSGLGISIWPHIIPPAITLWQAAAPPQSQ
HHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCHHHCHHHCCCHHHHHHCCCCCCCC
GFMLVGALLIIPVILGYTCWSYYVFRGKVQPGEGYH
CHHHHHHHHHHHHHHHHHHHHHHHEECEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: Oxidoreductases; Acting on diphenols and related substances as donors; With oxygen as acceptor [C]

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]