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The map label for this gene is ycjZ [H]

Identifier: 238894943

GI number: 238894943

Start: 2831594

End: 2832481

Strand: Direct

Name: ycjZ [H]

Synonym: KP1_2968

Alternate gene names: 238894943

Gene position: 2831594-2832481 (Clockwise)

Preceding gene: 238894931

Following gene: 238894944

Centisome position: 53.95

GC content: 64.19

Gene sequence:

>888_bases
ATGCTAAAAGAGAACGTAAACGATCTGCTCTCCTTTATGGTGGTGGCGCGTGAACGCAGCTTTACCCGCGCGGCGGCCCA
GCTTGGCGTGTCGCAGTCGGCGCTCAGCCATGCCATGCGCCATCTCGAAACGCGGCTCGATGTCCGGCTGTTGACCCGCA
CCACCCGCAGCGTGGTGCCGACCGAAGCGGGCGAGCGACTGATTCAGCGCCTCGGTCCGCATCTGGAAGAGATCGAGCAG
GCCCTGGCTGCATTGCGCGACACCCGAGAACGCCCGGCGGGCAACCTGCGCATTACCGCCGGGGAGCATGCCGCCAGCGC
GGTACTCTGGCCGGCGCTAAAGCCATTTATGCTGCAATATCCTGATATTAACATCGAAATCACTGTTGATAATGGGCTCA
CGGATATCGTGGGTGACCGCTTCGACGCCGGGGTGCGTCTCGGCGAACAGGTGGCAAAAGACATGATTGCCGTGCGCATC
GCCCCGGATATGCGGATGGCGGTGGTGGGTTCGCCGGCCTATCTGCAGCGGGCCGGTACGCCGCAAACGCCCTGGGATCT
TGCCCAACATCGCTGCATCAATCTGCGCCTGCCGACACGAGGGGGACTTTACGCCTGGGAATTTGCCCGCGATGGCCGGG
AGATTCAGGTGCGGGTGGAGGGACAGCTGATCCTCAACAGCCTGCCGCAGCGCATCGACGCGGCGGAGGCGGGCCTCGGG
CTGGCCTACGTTCCGGATGACTGCGTGGCGGAGGCCTTAGCCAGCGGCCGGCTGGTGCGGGTGCTGGCGGAGTGGACCCC
CGCCTTCCCCGGCTACCATCTCTATTACCCCAGCCGGCGCCAGCATACCAGCGCTTTCACGCTGTTACTGGAAACTCTGC
GACGCTGA

Upstream 100 bases:

>100_bases
CATTCTGCTCCACTGCGTCCGGCCATCAGGCTGGCACAATCCTCAGGCCGGGCATACACTCTGCGTACCTGTGAGCAGTA
TTCATCAATCCGGAAAGATT

Downstream 100 bases:

>100_bases
TCTCATTGATAAATCTGTCAAATGCTCTCGGTAAATGTTTTAGGTGCGTAACTATTAGGTTACGTGTAGGATTCAGCGCC
ATGTCTGAGCTTATCTCCTA

Product: putative LysR-family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 295; Mature: 295

Protein sequence:

>295_residues
MLKENVNDLLSFMVVARERSFTRAAAQLGVSQSALSHAMRHLETRLDVRLLTRTTRSVVPTEAGERLIQRLGPHLEEIEQ
ALAALRDTRERPAGNLRITAGEHAASAVLWPALKPFMLQYPDINIEITVDNGLTDIVGDRFDAGVRLGEQVAKDMIAVRI
APDMRMAVVGSPAYLQRAGTPQTPWDLAQHRCINLRLPTRGGLYAWEFARDGREIQVRVEGQLILNSLPQRIDAAEAGLG
LAYVPDDCVAEALASGRLVRVLAEWTPAFPGYHLYYPSRRQHTSAFTLLLETLRR

Sequences:

>Translated_295_residues
MLKENVNDLLSFMVVARERSFTRAAAQLGVSQSALSHAMRHLETRLDVRLLTRTTRSVVPTEAGERLIQRLGPHLEEIEQ
ALAALRDTRERPAGNLRITAGEHAASAVLWPALKPFMLQYPDINIEITVDNGLTDIVGDRFDAGVRLGEQVAKDMIAVRI
APDMRMAVVGSPAYLQRAGTPQTPWDLAQHRCINLRLPTRGGLYAWEFARDGREIQVRVEGQLILNSLPQRIDAAEAGLG
LAYVPDDCVAEALASGRLVRVLAEWTPAFPGYHLYYPSRRQHTSAFTLLLETLRR
>Mature_295_residues
MLKENVNDLLSFMVVARERSFTRAAAQLGVSQSALSHAMRHLETRLDVRLLTRTTRSVVPTEAGERLIQRLGPHLEEIEQ
ALAALRDTRERPAGNLRITAGEHAASAVLWPALKPFMLQYPDINIEITVDNGLTDIVGDRFDAGVRLGEQVAKDMIAVRI
APDMRMAVVGSPAYLQRAGTPQTPWDLAQHRCINLRLPTRGGLYAWEFARDGREIQVRVEGQLILNSLPQRIDAAEAGLG
LAYVPDDCVAEALASGRLVRVLAEWTPAFPGYHLYYPSRRQHTSAFTLLLETLRR

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1787589, Length=294, Percent_Identity=54.7619047619048, Blast_Score=332, Evalue=2e-92,
Organism=Escherichia coli, GI1787128, Length=293, Percent_Identity=40.2730375426621, Blast_Score=232, Evalue=2e-62,
Organism=Escherichia coli, GI1786401, Length=284, Percent_Identity=31.6901408450704, Blast_Score=134, Evalue=8e-33,
Organism=Escherichia coli, GI145693193, Length=292, Percent_Identity=30.1369863013699, Blast_Score=117, Evalue=1e-27,
Organism=Escherichia coli, GI87081978, Length=290, Percent_Identity=31.0344827586207, Blast_Score=113, Evalue=1e-26,
Organism=Escherichia coli, GI1789440, Length=271, Percent_Identity=26.9372693726937, Blast_Score=100, Evalue=1e-22,
Organism=Escherichia coli, GI1789639, Length=273, Percent_Identity=28.9377289377289, Blast_Score=96, Evalue=2e-21,
Organism=Escherichia coli, GI1786448, Length=289, Percent_Identity=27.3356401384083, Blast_Score=91, Evalue=7e-20,
Organism=Escherichia coli, GI1788748, Length=127, Percent_Identity=37.007874015748, Blast_Score=72, Evalue=6e-14,
Organism=Escherichia coli, GI1788706, Length=256, Percent_Identity=24.609375, Blast_Score=71, Evalue=8e-14,
Organism=Escherichia coli, GI157672245, Length=148, Percent_Identity=33.7837837837838, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI1789173, Length=256, Percent_Identity=27.734375, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI87082132, Length=261, Percent_Identity=24.1379310344828, Blast_Score=69, Evalue=4e-13,
Organism=Escherichia coli, GI145693105, Length=151, Percent_Identity=26.4900662251656, Blast_Score=68, Evalue=9e-13,
Organism=Escherichia coli, GI1786508, Length=189, Percent_Identity=30.1587301587302, Blast_Score=64, Evalue=9e-12,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 32860; Mature: 32860

Theoretical pI: Translated: 8.25; Mature: 8.25

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLKENVNDLLSFMVVARERSFTRAAAQLGVSQSALSHAMRHLETRLDVRLLTRTTRSVVP
CCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
TEAGERLIQRLGPHLEEIEQALAALRDTRERPAGNLRITAGEHAASAVLWPALKPFMLQY
CHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCEEEEECCHHHHHHHHHHHHHHHEEC
PDINIEITVDNGLTDIVGDRFDAGVRLGEQVAKDMIAVRIAPDMRMAVVGSPAYLQRAGT
CCCEEEEEECCCCHHHHCCHHHHHHHHHHHHHHHHHEEEECCCCEEEEECCCHHHHCCCC
PQTPWDLAQHRCINLRLPTRGGLYAWEFARDGREIQVRVEGQLILNSLPQRIDAAEAGLG
CCCCHHHHHCCEEEEEECCCCCEEEEEECCCCCEEEEEECCHHHHHHHHHHHHHHHHCCC
LAYVPDDCVAEALASGRLVRVLAEWTPAFPGYHLYYPSRRQHTSAFTLLLETLRR
EEECCHHHHHHHHHCCHHHHHHHHHCCCCCCEEEECCCCHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MLKENVNDLLSFMVVARERSFTRAAAQLGVSQSALSHAMRHLETRLDVRLLTRTTRSVVP
CCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
TEAGERLIQRLGPHLEEIEQALAALRDTRERPAGNLRITAGEHAASAVLWPALKPFMLQY
CHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCEEEEECCHHHHHHHHHHHHHHHEEC
PDINIEITVDNGLTDIVGDRFDAGVRLGEQVAKDMIAVRIAPDMRMAVVGSPAYLQRAGT
CCCEEEEEECCCCHHHHCCHHHHHHHHHHHHHHHHHEEEECCCCEEEEECCCHHHHCCCC
PQTPWDLAQHRCINLRLPTRGGLYAWEFARDGREIQVRVEGQLILNSLPQRIDAAEAGLG
CCCCHHHHHCCEEEEEECCCCCEEEEEECCCCCEEEEEECCHHHHHHHHHHHHHHHHCCC
LAYVPDDCVAEALASGRLVRVLAEWTPAFPGYHLYYPSRRQHTSAFTLLLETLRR
EEECCHHHHHHHHHCCHHHHHHHHHCCCCCCEEEECCCCHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503 [H]