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The map label for this gene is yeaM [H]

Identifier: 238894816

GI number: 238894816

Start: 2698214

End: 2699014

Strand: Reverse

Name: yeaM [H]

Synonym: KP1_2829

Alternate gene names: 238894816

Gene position: 2699014-2698214 (Counterclockwise)

Preceding gene: 238894819

Following gene: 238894809

Centisome position: 51.42

GC content: 51.94

Gene sequence:

>801_bases
ATGATAATGGCAGGGGCTAAATCTGAAATGCCAGGTAGTATAGATAAAGCGCCAAGACATGATGAAGCCACAGGCTGGTC
CAGTACTGCGATAAGCTATCAACGCGGCGAGGCAGATCCTCCCCATCATCATGTTGAGGGGCAGCTACTCTTCGCCACCA
GAGGGGTTATGCTGGTGCAAACAGAGAGCGACCGTTGGGTGATCCCTCCTCAGCGGGCATTATGGCTACCGCCTCTGCAT
ATCCATAGTTATCATCTGCTTTCACAAACCGATCTCAGGGCGATCTATTTCAGCAGTAGCCTTATCGCAGAATGTACGAG
CTTTACGAAGAGTCAGCAGGTGCATGTGATCACGGCTACGCCCTTAGTCAAAGAGCTTATCGCAGGGCTGTTCAGTGAGG
ACTACGCCAGACCGAGTCAACGGAAGATAGCGTTGTTGCTTCTGGAAATTCTCAGCGAGGCTCCACCTTTAACGATGGCG
CTTCCCATGCCGAATGATGAGCGATTATTCAGCGCGGCCAGATCGCTACTGGTCAATCAGCGCTGGGAAGCATCGCTGAG
CGAGCTGGCTTTTATGTCGGCCATGTCGGAACGGACCTTTTCCCGCTTGTTTATGAAGGATACAGGCTTTAGTTTTAGAA
CATGGAAGCAGAGAGCCAGAATTTGCGCTTCGTTGGATCTTCTCGCGAACGGTGTTCCAATCAAACAGGTCGCTTACCAG
CTTGGTTTCTCATGCCCGGCGGCCTTTACCGCTGCTTTTCGCTGCATTTTGGGGGCAACGCCACGCGATTATGTGCCTTA
A

Upstream 100 bases:

>100_bases
ACACGCATGAGGTTAAGCTCCTGTAATATCTTTGATGATCAGAATGATAAGTCACGCACCCATTGCCTAAGGCTCTACTC
CGGGTGGTTCCAGTTTCGAT

Downstream 100 bases:

>100_bases
ACCGGGAAACCCTCAAAGCGGTCTTTGAGACTGTCATGGGCATATTACCAGACGCAGAAACCCTGCGAGGGTAGGGGTAT
CCCGCCTTTGCTGTTGAGAA

Product: putative AraC-type regulatory protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 266; Mature: 266

Protein sequence:

>266_residues
MIMAGAKSEMPGSIDKAPRHDEATGWSSTAISYQRGEADPPHHHVEGQLLFATRGVMLVQTESDRWVIPPQRALWLPPLH
IHSYHLLSQTDLRAIYFSSSLIAECTSFTKSQQVHVITATPLVKELIAGLFSEDYARPSQRKIALLLLEILSEAPPLTMA
LPMPNDERLFSAARSLLVNQRWEASLSELAFMSAMSERTFSRLFMKDTGFSFRTWKQRARICASLDLLANGVPIKQVAYQ
LGFSCPAAFTAAFRCILGATPRDYVP

Sequences:

>Translated_266_residues
MIMAGAKSEMPGSIDKAPRHDEATGWSSTAISYQRGEADPPHHHVEGQLLFATRGVMLVQTESDRWVIPPQRALWLPPLH
IHSYHLLSQTDLRAIYFSSSLIAECTSFTKSQQVHVITATPLVKELIAGLFSEDYARPSQRKIALLLLEILSEAPPLTMA
LPMPNDERLFSAARSLLVNQRWEASLSELAFMSAMSERTFSRLFMKDTGFSFRTWKQRARICASLDLLANGVPIKQVAYQ
LGFSCPAAFTAAFRCILGATPRDYVP
>Mature_266_residues
MIMAGAKSEMPGSIDKAPRHDEATGWSSTAISYQRGEADPPHHHVEGQLLFATRGVMLVQTESDRWVIPPQRALWLPPLH
IHSYHLLSQTDLRAIYFSSSLIAECTSFTKSQQVHVITATPLVKELIAGLFSEDYARPSQRKIALLLLEILSEAPPLTMA
LPMPNDERLFSAARSLLVNQRWEASLSELAFMSAMSERTFSRLFMKDTGFSFRTWKQRARICASLDLLANGVPIKQVAYQ
LGFSCPAAFTAAFRCILGATPRDYVP

Specific function: Unknown

COG id: COG2207

COG function: function code K; AraC-type DNA-binding domain-containing proteins

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1788091, Length=253, Percent_Identity=28.8537549407115, Blast_Score=105, Evalue=5e-24,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011051
- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR003313
- InterPro:   IPR018062
- InterPro:   IPR018060
- InterPro:   IPR014710 [H]

Pfam domain/function: PF02311 AraC_binding [H]

EC number: NA

Molecular weight: Translated: 29679; Mature: 29679

Theoretical pI: Translated: 8.34; Mature: 8.34

Prosite motif: PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
4.9 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
4.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIMAGAKSEMPGSIDKAPRHDEATGWSSTAISYQRGEADPPHHHVEGQLLFATRGVMLVQ
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCEEEEEECCEEEEE
TESDRWVIPPQRALWLPPLHIHSYHLLSQTDLRAIYFSSSLIAECTSFTKSQQVHVITAT
ECCCCEEECCCCCEECCCHHHHHEEHHCCCCCEEEEEHHHHHHHHHHHCCCCEEEEEECC
PLVKELIAGLFSEDYARPSQRKIALLLLEILSEAPPLTMALPMPNDERLFSAARSLLVNQ
HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCEEEECCCCHHHHHHHHHHHHHCC
RWEASLSELAFMSAMSERTFSRLFMKDTGFSFRTWKQRARICASLDLLANGVPIKQVAYQ
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHH
LGFSCPAAFTAAFRCILGATPRDYVP
HCCCCHHHHHHHHHHHHCCCCCCCCC
>Mature Secondary Structure
MIMAGAKSEMPGSIDKAPRHDEATGWSSTAISYQRGEADPPHHHVEGQLLFATRGVMLVQ
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCEEEEEECCEEEEE
TESDRWVIPPQRALWLPPLHIHSYHLLSQTDLRAIYFSSSLIAECTSFTKSQQVHVITAT
ECCCCEEECCCCCEECCCHHHHHEEHHCCCCCEEEEEHHHHHHHHHHHCCCCEEEEEECC
PLVKELIAGLFSEDYARPSQRKIALLLLEILSEAPPLTMALPMPNDERLFSAARSLLVNQ
HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCEEEECCCCHHHHHHHHHHHHHCC
RWEASLSELAFMSAMSERTFSRLFMKDTGFSFRTWKQRARICASLDLLANGVPIKQVAYQ
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHH
LGFSCPAAFTAAFRCILGATPRDYVP
HCCCCHHHHHHHHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]