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The map label for this gene is yecS [H]

Identifier: 238894800

GI number: 238894800

Start: 2682616

End: 2683272

Strand: Reverse

Name: yecS [H]

Synonym: KP1_2811

Alternate gene names: 238894800

Gene position: 2683272-2682616 (Counterclockwise)

Preceding gene: 238894801

Following gene: 238894799

Centisome position: 51.12

GC content: 61.34

Gene sequence:

>657_bases
ATGACCACTTTTACTGACTGGGACATTATCCGCAACCTGCTGCTGGCCGGTCGCTGGACGGTGCTGCTGTCGCTGGTCGC
GTTCACCGGCGGGGCGCTGGTGACCTTACCGTTACTGCTGCTGCGCCTCACCGGCGGACGCCAGGTGAAACGGCTGATCC
GCGGGTATATTGAGCTGTTCCAGGGCACGCCGCTGCTGATGCAGCTGTTTCTGGCATTCTTTGGCGTGGCGCTGTTCGGC
GTCGACGTCTCGGCGTGGACCGCCGCCTCGGTCGCCCTGACGCTCTACACCAGCGCCTTTCTGCTGGATATCTGGTTCGG
CAGCATTCGCGCGCTGCCGAAAGGCCAGTGGGAAGCCTCGCGGTGTCTCGGGCTGAGCTTCGGCCAGACCCTGTACCGCG
TGGTGGCGCCGCAGGCGCTGCGCATTGCCATCGCGCCGACGGTGGGCTTTGCCGTACAGGTGATCAAAGGCACGGCGCTG
GCATCGATTATCGGCTTTGTGGAGCTGACCAAGGCCGGGACGATGCTGACCAACGTCACTTATCAGCCGTTTAAAGTGTT
TGCCCTTGTGGCGCTGGGCTATTTCATTCTGTGCTATCCGCTGTCCCGCTACAGCCGCTATCTGGAGAACAAATTCAATG
CCTCTCATCACCATTAA

Upstream 100 bases:

>100_bases
AGGTCTATCTGGTAACCACCGGGATCTACTTAGCGTTATCGATAGCGATGCGCCAGCTGCTGATGGCGGCGGGGCGTAAA
TGGCTGGGGGTACAGGCCTG

Downstream 100 bases:

>100_bases
TCAGATGCAGAAGTACTACGGCGACAACCATGTGCTGAAGGGCGTCGATCTGGATATCGACATGGGGGAAGTGATCTCGA
TCATCGGCCGCAGCGGCTCG

Product: putative amino acid ABC transport system permease component

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 218; Mature: 217

Protein sequence:

>218_residues
MTTFTDWDIIRNLLLAGRWTVLLSLVAFTGGALVTLPLLLLRLTGGRQVKRLIRGYIELFQGTPLLMQLFLAFFGVALFG
VDVSAWTAASVALTLYTSAFLLDIWFGSIRALPKGQWEASRCLGLSFGQTLYRVVAPQALRIAIAPTVGFAVQVIKGTAL
ASIIGFVELTKAGTMLTNVTYQPFKVFALVALGYFILCYPLSRYSRYLENKFNASHHH

Sequences:

>Translated_218_residues
MTTFTDWDIIRNLLLAGRWTVLLSLVAFTGGALVTLPLLLLRLTGGRQVKRLIRGYIELFQGTPLLMQLFLAFFGVALFG
VDVSAWTAASVALTLYTSAFLLDIWFGSIRALPKGQWEASRCLGLSFGQTLYRVVAPQALRIAIAPTVGFAVQVIKGTAL
ASIIGFVELTKAGTMLTNVTYQPFKVFALVALGYFILCYPLSRYSRYLENKFNASHHH
>Mature_217_residues
TTFTDWDIIRNLLLAGRWTVLLSLVAFTGGALVTLPLLLLRLTGGRQVKRLIRGYIELFQGTPLLMQLFLAFFGVALFGV
DVSAWTAASVALTLYTSAFLLDIWFGSIRALPKGQWEASRCLGLSFGQTLYRVVAPQALRIAIAPTVGFAVQVIKGTALA
SIIGFVELTKAGTMLTNVTYQPFKVFALVALGYFILCYPLSRYSRYLENKFNASHHH

Specific function: Probably part of the binding-protein-dependent transport system yecCS for an amino acid; probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG0765

COG function: function code E; ABC-type amino acid transport system, permease component

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1788226, Length=211, Percent_Identity=32.2274881516588, Blast_Score=119, Evalue=2e-28,
Organism=Escherichia coli, GI87082239, Length=204, Percent_Identity=32.3529411764706, Blast_Score=93, Evalue=1e-20,
Organism=Escherichia coli, GI1787086, Length=170, Percent_Identity=33.5294117647059, Blast_Score=87, Evalue=1e-18,
Organism=Escherichia coli, GI1787030, Length=209, Percent_Identity=28.7081339712919, Blast_Score=82, Evalue=2e-17,
Organism=Escherichia coli, GI1788645, Length=205, Percent_Identity=29.2682926829268, Blast_Score=81, Evalue=5e-17,
Organism=Escherichia coli, GI48994930, Length=117, Percent_Identity=39.3162393162393, Blast_Score=76, Evalue=2e-15,
Organism=Escherichia coli, GI1788646, Length=161, Percent_Identity=31.055900621118, Blast_Score=69, Evalue=3e-13,
Organism=Escherichia coli, GI1786874, Length=191, Percent_Identity=26.1780104712042, Blast_Score=67, Evalue=7e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010065
- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 24072; Mature: 23941

Theoretical pI: Translated: 10.39; Mature: 10.39

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTTFTDWDIIRNLLLAGRWTVLLSLVAFTGGALVTLPLLLLRLTGGRQVKRLIRGYIELF
CCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
QGTPLLMQLFLAFFGVALFGVDVSAWTAASVALTLYTSAFLLDIWFGSIRALPKGQWEAS
CCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHH
RCLGLSFGQTLYRVVAPQALRIAIAPTVGFAVQVIKGTALASIIGFVELTKAGTMLTNVT
HHHCCHHHHHHHHHHCCHHHEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHCCC
YQPFKVFALVALGYFILCYPLSRYSRYLENKFNASHHH
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure 
TTFTDWDIIRNLLLAGRWTVLLSLVAFTGGALVTLPLLLLRLTGGRQVKRLIRGYIELF
CCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
QGTPLLMQLFLAFFGVALFGVDVSAWTAASVALTLYTSAFLLDIWFGSIRALPKGQWEAS
CCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHH
RCLGLSFGQTLYRVVAPQALRIAIAPTVGFAVQVIKGTALASIIGFVELTKAGTMLTNVT
HHHCCHHHHHHHHHHCCHHHEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHCCC
YQPFKVFALVALGYFILCYPLSRYSRYLENKFNASHHH
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 12471157 [H]