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The map label for this gene is yhjC [C]

Identifier: 238894775

GI number: 238894775

Start: 2657138

End: 2658043

Strand: Reverse

Name: yhjC [C]

Synonym: KP1_2784

Alternate gene names: 238894775

Gene position: 2658043-2657138 (Counterclockwise)

Preceding gene: 238894777

Following gene: 238894773

Centisome position: 50.64

GC content: 48.57

Gene sequence:

>906_bases
TTGATGCGGCCAGTTCTTGACTTTAATGCGCTGAAAATCTTCATTGCTGTGGTGGAAAGAGACAGTTTTGTCGGGGCATC
GAAAGCCCTGGAAATGCCGACATCAAATGTGAGCCGTTGCATTTCTCAGTTAGAAGACAAACTGAACCTTCAGCTCATTG
AGCGCAGTACCCGACATATGAAGCTCACACAGGCTGGGCATCTACTCTATACCCGGGCGAAGCCATTACTGGAAGCACTT
GAGCAAACTGAAACCGAATTAACGTTGCGACAAATGCAATTCAAGGGGCCATTACGTATCTGTATTCCCAATGAAATCGG
TCCTGTATTGCTGGGCTCTGTTGTTGCTGATTTCGCCTGTCAGCATCCGGATCTGGAGATAAGTTGCGTCACAAATTTGT
CGGGTTATGAATCCCTGCGAGATGATCTGGATTTAGCTGTCATTGTTAGCCGTGGTCAGATGGATGACAGTGACTACATC
GCCCGTCATCTGGTGACGATCCCTTGCACCATCGTTGCGGCCCCCTCCGTCATCCAGCGTTATGGCACGCCTTCTCGAAT
ACAGCAATTTGAAGAGTTACCCTGTATTACAACGGTGAATGCGCTTAAAGGCGCTCCCTGGCAGTTTGTGAATAAAAAGG
GCGGATTCGAGACGATCAAGGTTAACGGTCGTTATCGGGTCAACAGCGGAGAGATGGCAGGGCGAGCGGCCATCTCAGGT
GTCGGTTTTGCCATCCTGTCGAAACAAGCCTGCCAACCCTATATTGATGATGGGTGGTTAATCGAGATTGAATTTGAACA
ATCGGCAGCCCCCTTGCAATTGTTCGCTCTGTATTCAGATCGGCGTTACTTGCCGGCAAAAACAAGAGCGCTTATTGATT
TCATGCATCAGAGATTGAGTCATTAA

Upstream 100 bases:

>100_bases
AGCAAGCGACCTGTGGATGAAAGATATCCTAGCTTAACTGCTATCAAACTTGTCGATTAGATGGTAAAAATGGCACTCAT
TATTATCATATGTGGGATAG

Downstream 100 bases:

>100_bases
CAAGAGGCCATCTTCAGCGCGCCAGGGCAGCGCTGTTTTATTCAGCCGGCCGGCTCAAGCAACAAATCTCTGATATAGCC
CTCCAGCAGGGAGGCACAAA

Product: putative LysR-family transcriptional regulator

Products: NA

Alternate protein names: ORF2 [H]

Number of amino acids: Translated: 301; Mature: 301

Protein sequence:

>301_residues
MMRPVLDFNALKIFIAVVERDSFVGASKALEMPTSNVSRCISQLEDKLNLQLIERSTRHMKLTQAGHLLYTRAKPLLEAL
EQTETELTLRQMQFKGPLRICIPNEIGPVLLGSVVADFACQHPDLEISCVTNLSGYESLRDDLDLAVIVSRGQMDDSDYI
ARHLVTIPCTIVAAPSVIQRYGTPSRIQQFEELPCITTVNALKGAPWQFVNKKGGFETIKVNGRYRVNSGEMAGRAAISG
VGFAILSKQACQPYIDDGWLIEIEFEQSAAPLQLFALYSDRRYLPAKTRALIDFMHQRLSH

Sequences:

>Translated_301_residues
MMRPVLDFNALKIFIAVVERDSFVGASKALEMPTSNVSRCISQLEDKLNLQLIERSTRHMKLTQAGHLLYTRAKPLLEAL
EQTETELTLRQMQFKGPLRICIPNEIGPVLLGSVVADFACQHPDLEISCVTNLSGYESLRDDLDLAVIVSRGQMDDSDYI
ARHLVTIPCTIVAAPSVIQRYGTPSRIQQFEELPCITTVNALKGAPWQFVNKKGGFETIKVNGRYRVNSGEMAGRAAISG
VGFAILSKQACQPYIDDGWLIEIEFEQSAAPLQLFALYSDRRYLPAKTRALIDFMHQRLSH
>Mature_301_residues
MMRPVLDFNALKIFIAVVERDSFVGASKALEMPTSNVSRCISQLEDKLNLQLIERSTRHMKLTQAGHLLYTRAKPLLEAL
EQTETELTLRQMQFKGPLRICIPNEIGPVLLGSVVADFACQHPDLEISCVTNLSGYESLRDDLDLAVIVSRGQMDDSDYI
ARHLVTIPCTIVAAPSVIQRYGTPSRIQQFEELPCITTVNALKGAPWQFVNKKGGFETIKVNGRYRVNSGEMAGRAAISG
VGFAILSKQACQPYIDDGWLIEIEFEQSAAPLQLFALYSDRRYLPAKTRALIDFMHQRLSH

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI145693193, Length=288, Percent_Identity=29.1666666666667, Blast_Score=116, Evalue=2e-27,
Organism=Escherichia coli, GI1786401, Length=291, Percent_Identity=28.1786941580756, Blast_Score=115, Evalue=3e-27,
Organism=Escherichia coli, GI1789639, Length=283, Percent_Identity=25.7950530035336, Blast_Score=108, Evalue=6e-25,
Organism=Escherichia coli, GI87081978, Length=297, Percent_Identity=27.9461279461279, Blast_Score=103, Evalue=2e-23,
Organism=Escherichia coli, GI1789440, Length=289, Percent_Identity=24.9134948096886, Blast_Score=99, Evalue=5e-22,
Organism=Escherichia coli, GI1787128, Length=293, Percent_Identity=24.2320819112628, Blast_Score=91, Evalue=8e-20,
Organism=Escherichia coli, GI1787589, Length=288, Percent_Identity=25.3472222222222, Blast_Score=89, Evalue=5e-19,
Organism=Escherichia coli, GI1786448, Length=256, Percent_Identity=27.34375, Blast_Score=72, Evalue=4e-14,
Organism=Escherichia coli, GI1790011, Length=309, Percent_Identity=23.6245954692557, Blast_Score=71, Evalue=7e-14,
Organism=Escherichia coli, GI1787601, Length=122, Percent_Identity=30.327868852459, Blast_Score=68, Evalue=9e-13,
Organism=Escherichia coli, GI1788481, Length=296, Percent_Identity=23.3108108108108, Blast_Score=68, Evalue=9e-13,
Organism=Escherichia coli, GI1789173, Length=259, Percent_Identity=25.0965250965251, Blast_Score=66, Evalue=3e-12,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 33656; Mature: 33656

Theoretical pI: Translated: 7.07; Mature: 7.07

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.3 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
5.0 %Cys+Met (Translated Protein)
2.3 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
5.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMRPVLDFNALKIFIAVVERDSFVGASKALEMPTSNVSRCISQLEDKLNLQLIERSTRHM
CCCCCCCHHHHEEEEHHHHCCCCCCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHE
KLTQAGHLLYTRAKPLLEALEQTETELTLRQMQFKGPLRICIPNEIGPVLLGSVVADFAC
EEHHCCCEEEHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHC
QHPDLEISCVTNLSGYESLRDDLDLAVIVSRGQMDDSDYIARHLVTIPCTIVAAPSVIQR
CCCCEEEEEECCCCHHHHHHHCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHCCHHHHHH
YGTPSRIQQFEELPCITTVNALKGAPWQFVNKKGGFETIKVNGRYRVNSGEMAGRAAISG
CCCHHHHHHHHHCCCCEEHHHHCCCCHHHHCCCCCEEEEEECCEEEECCCCCCCHHHHHH
VGFAILSKQACQPYIDDGWLIEIEFEQSAAPLQLFALYSDRRYLPAKTRALIDFMHQRLS
HHHHHHHHHHCCCCCCCCEEEEEEECCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHC
H
C
>Mature Secondary Structure
MMRPVLDFNALKIFIAVVERDSFVGASKALEMPTSNVSRCISQLEDKLNLQLIERSTRHM
CCCCCCCHHHHEEEEHHHHCCCCCCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHE
KLTQAGHLLYTRAKPLLEALEQTETELTLRQMQFKGPLRICIPNEIGPVLLGSVVADFAC
EEHHCCCEEEHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHC
QHPDLEISCVTNLSGYESLRDDLDLAVIVSRGQMDDSDYIARHLVTIPCTIVAAPSVIQR
CCCCEEEEEECCCCHHHHHHHCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHCCHHHHHH
YGTPSRIQQFEELPCITTVNALKGAPWQFVNKKGGFETIKVNGRYRVNSGEMAGRAAISG
CCCHHHHHHHHHCCCCEEHHHHCCCCHHHHCCCCCEEEEEECCEEEECCCCCCCHHHHHH
VGFAILSKQACQPYIDDGWLIEIEFEQSAAPLQLFALYSDRRYLPAKTRALIDFMHQRLS
HHHHHHHHHHCCCCCCCCEEEEEEECCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHC
H
C

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8635745; 7542800 [H]