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The map label for this gene is ynjC [H]

Identifier: 238894270

GI number: 238894270

Start: 2159746

End: 2161281

Strand: Reverse

Name: ynjC [H]

Synonym: KP1_2244

Alternate gene names: 238894270

Gene position: 2161281-2159746 (Counterclockwise)

Preceding gene: 238894271

Following gene: 238894269

Centisome position: 41.18

GC content: 70.83

Gene sequence:

>1536_bases
ATGGCTGCGCCGCTACGGTACCCACTGATCCTGCTGGCCTGGGGGGCGATGGCGGCGATCTATCTGCCGCTGCTCCCCGC
CGCCGGGGAACTGGTGGGCGCTGCGCGCTCCCCGGCCCACTGGCGGGCGCTGTTCGCCGACCCGCAGCTGGGCCAGGCGC
TGGCCGCCACGCTCGTCTCCACGCTGTTGTCCGTCGGCGGCGCGCTGCTGATCGCCCTGACCATCGTCGCCGCCCTCTGG
CCTTCGGCCCGCTGGCGGCGGCTGGCTTCCCGTCTGCCGCTGCTGCTGGCGGTGCCCCATCTCGCCCTGGCGACGGCGGC
GCTGCTGCTGTTCGCCGAAGGGGGCTGGCTCTGGCAGCAATTGCCGTTTCTGACGCCGCCGGTCGACCGGTACGGCATTG
GGCTTGGCCTGACGATGGCCCTGAAAGAGAGCGCCTTTGTGCTGTGGGTGATCTATGGCCTGCTGGGAGAGAAACGCCTC
GCCGACCAGGCGACCGCCCTGAAGAGCCTCGGCTACGGCCGCTGGCAGTGCCTGCGCTGGCTGGTGCTGCCCGCCCTGCT
GCCCGCCCTCGGCATGGTGCTGCTGGCCACCACCGCCTGGAGCCTGTCGGCGGTAGACGTCGCCCTGGTGCTGGGGCCCG
GCAATCCGCCCACCCTCGCCGTGCTGGCGTGGCAATGGTTAAGCCAGGGCGATGAGCTGCAGCAGGCCAAAGGGGCGCTG
GCCAGCCTGCTGCTGATGGCGATCCTCGGCGGGCTGGCGCTGGTCGCCTGGGGCGGATGGCGGCTACAGCGCCAGTACCA
GCCCGATCTGCACGGTGTTCGTCACCCGCATCCTCATGCCCTGCCCAGCCGCCTGCTGGCGGCGCTGCTGCCGCTGAGCG
GTCTGCTGGGCGCGCTATTGCTGGCGGGGCTGGCGCGCTCGGCGCCGCCGCAGATGGATGCTCTGGGCAACAGCCTTGGG
CTGGCGCTGGCGGCCTGCGCCCTCGGCGCGGCTGTCTGCCTGCTGTGGCTGGCCTGCGGCCCGGCGCGAGGCGATGGCTG
GGTCTGGCTACCGCTGGTCCTGCCGGCCCTGCCGCTGGCCGACGGCCAGTACCGGTTGGCGCTGTATGCCTGGCTTGACG
GTGACTGGTGGACCGTCCTGTGGGGCCATCTGCTGTGGGTGGTGCCCTGGATGCTGTTTATTTTGCGCCCGGCCTGGCGC
CAGCGCGATCCGCGGCTGACGGTTGTCGCCCGCACGCTCGGCTGGGGATCGACGCGTATTTTCTGGTTGCTGACCCTGCC
TTCGCTAACTCGCCCACTGCTGACCGCCCTGGCGGTGGGCTTCTCAGTGAGCATCGCGCAGTATCTGCCAACGCTATGGC
TGGGGGCTGGCCGAATTCCGACGCTCACCAGCCAGGCGGTGGCGCTCAGCAGCGGCGGCGAGGCGCAGACGCTCGCCGCT
CAGGCGCTGTGGCAATTATTGCTGCCGGCGGTATGCTTTACCCTAACGGCTCTGCTGGCCTGGCTGGCAGGCCGCTATCG
ACGAGGACTTCGCTAG

Upstream 100 bases:

>100_bases
CTGACGGCCAGCGCCAGGCGCTGGCGGCAGCCCTGCCGCAGGATCTGCCGCCGGTGCTTGCCGAGCCTCACGCGGCATGG
GTTGACGCGCTGGAGCAGGA

Downstream 100 bases:

>100_bases
TGCTAACCGTAAACCATCTGACTCTGAGCGTGAGACGCCAGCCGCTGCTGCGGGAGGTCGCCTTTTCGGTAGCCCCGGGG
GAGGTGCTGACGCTGATGGG

Product: putative ABC transport system permease component

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 511; Mature: 510

Protein sequence:

>511_residues
MAAPLRYPLILLAWGAMAAIYLPLLPAAGELVGAARSPAHWRALFADPQLGQALAATLVSTLLSVGGALLIALTIVAALW
PSARWRRLASRLPLLLAVPHLALATAALLLFAEGGWLWQQLPFLTPPVDRYGIGLGLTMALKESAFVLWVIYGLLGEKRL
ADQATALKSLGYGRWQCLRWLVLPALLPALGMVLLATTAWSLSAVDVALVLGPGNPPTLAVLAWQWLSQGDELQQAKGAL
ASLLLMAILGGLALVAWGGWRLQRQYQPDLHGVRHPHPHALPSRLLAALLPLSGLLGALLLAGLARSAPPQMDALGNSLG
LALAACALGAAVCLLWLACGPARGDGWVWLPLVLPALPLADGQYRLALYAWLDGDWWTVLWGHLLWVVPWMLFILRPAWR
QRDPRLTVVARTLGWGSTRIFWLLTLPSLTRPLLTALAVGFSVSIAQYLPTLWLGAGRIPTLTSQAVALSSGGEAQTLAA
QALWQLLLPAVCFTLTALLAWLAGRYRRGLR

Sequences:

>Translated_511_residues
MAAPLRYPLILLAWGAMAAIYLPLLPAAGELVGAARSPAHWRALFADPQLGQALAATLVSTLLSVGGALLIALTIVAALW
PSARWRRLASRLPLLLAVPHLALATAALLLFAEGGWLWQQLPFLTPPVDRYGIGLGLTMALKESAFVLWVIYGLLGEKRL
ADQATALKSLGYGRWQCLRWLVLPALLPALGMVLLATTAWSLSAVDVALVLGPGNPPTLAVLAWQWLSQGDELQQAKGAL
ASLLLMAILGGLALVAWGGWRLQRQYQPDLHGVRHPHPHALPSRLLAALLPLSGLLGALLLAGLARSAPPQMDALGNSLG
LALAACALGAAVCLLWLACGPARGDGWVWLPLVLPALPLADGQYRLALYAWLDGDWWTVLWGHLLWVVPWMLFILRPAWR
QRDPRLTVVARTLGWGSTRIFWLLTLPSLTRPLLTALAVGFSVSIAQYLPTLWLGAGRIPTLTSQAVALSSGGEAQTLAA
QALWQLLLPAVCFTLTALLAWLAGRYRRGLR
>Mature_510_residues
AAPLRYPLILLAWGAMAAIYLPLLPAAGELVGAARSPAHWRALFADPQLGQALAATLVSTLLSVGGALLIALTIVAALWP
SARWRRLASRLPLLLAVPHLALATAALLLFAEGGWLWQQLPFLTPPVDRYGIGLGLTMALKESAFVLWVIYGLLGEKRLA
DQATALKSLGYGRWQCLRWLVLPALLPALGMVLLATTAWSLSAVDVALVLGPGNPPTLAVLAWQWLSQGDELQQAKGALA
SLLLMAILGGLALVAWGGWRLQRQYQPDLHGVRHPHPHALPSRLLAALLPLSGLLGALLLAGLARSAPPQMDALGNSLGL
ALAACALGAAVCLLWLACGPARGDGWVWLPLVLPALPLADGQYRLALYAWLDGDWWTVLWGHLLWVVPWMLFILRPAWRQ
RDPRLTVVARTLGWGSTRIFWLLTLPSLTRPLLTALAVGFSVSIAQYLPTLWLGAGRIPTLTSQAVALSSGGEAQTLAAQ
ALWQLLLPAVCFTLTALLAWLAGRYRRGLR

Specific function: Probably part of the binding-protein-dependent transport system ynjCD. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG4135

COG function: function code R; ABC-type uncharacterized transport system, permease component

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 ABC transmembrane type-1 domains [H]

Homologues:

Organism=Escherichia coli, GI145693149, Length=511, Percent_Identity=59.0998043052838, Blast_Score=493, Evalue=1e-140,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 54869; Mature: 54738

Theoretical pI: Translated: 10.67; Mature: 10.67

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAAPLRYPLILLAWGAMAAIYLPLLPAAGELVGAARSPAHWRALFADPQLGQALAATLVS
CCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHCCCCCHHHHEEECCCHHHHHHHHHHHH
TLLSVGGALLIALTIVAALWPSARWRRLASRLPLLLAVPHLALATAALLLFAEGGWLWQQ
HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCHHHHH
LPFLTPPVDRYGIGLGLTMALKESAFVLWVIYGLLGEKRLADQATALKSLGYGRWQCLRW
CCCCCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCHHHHHHHH
LVLPALLPALGMVLLATTAWSLSAVDVALVLGPGNPPTLAVLAWQWLSQGDELQQAKGAL
HHHHHHHHHHHHHHHHHHHHHHHEEEEEEEECCCCCCHHHHHHHHHHCCCHHHHHHHHHH
ASLLLMAILGGLALVAWGGWRLQRQYQPDLHGVRHPHPHALPSRLLAALLPLSGLLGALL
HHHHHHHHHHHHHHHHCCCCEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
LAGLARSAPPQMDALGNSLGLALAACALGAAVCLLWLACGPARGDGWVWLPLVLPALPLA
HHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEHHHHHCCCCCC
DGQYRLALYAWLDGDWWTVLWGHLLWVVPWMLFILRPAWRQRDPRLTVVARTLGWGSTRI
CCCEEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHCHHHHCCCCCEEEEEECCCCCCCEE
FWLLTLPSLTRPLLTALAVGFSVSIAQYLPTLWLGAGRIPTLTSQAVALSSGGEAQTLAA
EEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHEECCCCCHHHHHH
QALWQLLLPAVCFTLTALLAWLAGRYRRGLR
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure 
AAPLRYPLILLAWGAMAAIYLPLLPAAGELVGAARSPAHWRALFADPQLGQALAATLVS
CCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHCCCCCHHHHEEECCCHHHHHHHHHHHH
TLLSVGGALLIALTIVAALWPSARWRRLASRLPLLLAVPHLALATAALLLFAEGGWLWQQ
HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCHHHHH
LPFLTPPVDRYGIGLGLTMALKESAFVLWVIYGLLGEKRLADQATALKSLGYGRWQCLRW
CCCCCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCHHHHHHHH
LVLPALLPALGMVLLATTAWSLSAVDVALVLGPGNPPTLAVLAWQWLSQGDELQQAKGAL
HHHHHHHHHHHHHHHHHHHHHHHEEEEEEEECCCCCCHHHHHHHHHHCCCHHHHHHHHHH
ASLLLMAILGGLALVAWGGWRLQRQYQPDLHGVRHPHPHALPSRLLAALLPLSGLLGALL
HHHHHHHHHHHHHHHHCCCCEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
LAGLARSAPPQMDALGNSLGLALAACALGAAVCLLWLACGPARGDGWVWLPLVLPALPLA
HHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEHHHHHCCCCCC
DGQYRLALYAWLDGDWWTVLWGHLLWVVPWMLFILRPAWRQRDPRLTVVARTLGWGSTRI
CCCEEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHCHHHHCCCCCEEEEEECCCCCCCEE
FWLLTLPSLTRPLLTALAVGFSVSIAQYLPTLWLGAGRIPTLTSQAVALSSGGEAQTLAA
EEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHEECCCCCHHHHHH
QALWQLLLPAVCFTLTALLAWLAGRYRRGLR
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503 [H]