BacMap

Definition	Klebsiella pneumoniae NTUH-K2044 chromosome, complete genome.
Accession	NC_012731
Length	5,248,520

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The map label for this gene is ynjD [H]

Identifier: 238894269

GI number: 238894269

Start: 2159210

End: 2159746

Strand: Reverse

Name: ynjD [H]

Synonym: KP1_2243

Alternate gene names: 238894269

Gene position: 2159746-2159210 (Counterclockwise)

Preceding gene: 238894270

Following gene: 238894268

Centisome position: 41.15

GC content: 66.48

Gene sequence:

>537_bases
GTGCTAACCGTAAACCATCTGACTCTGAGCGTGAGACGCCAGCCGCTGCTGCGGGAGGTCGCCTTTTCGGTAGCCCCGGG
GGAGGTGCTGACGCTGATGGGCCCCTCCGGTAGCGGGAAATCAACACTGTTTGCCTGGATGATTGGCGCCCTGTCCGGCG
ATTTTCGCGCCCGAGGCGAACTGTGGCTCAACAAACGGCGTTGCGATACGCTGCCGACAGAGCATCGGCGCATCGGCATT
CTGTTTCAGGACCCGTTACTGTTCGACCATTTCAGCGTCGGGCAAAATTTACAGCTGGCGCTGCCGGAGAACGTGCGCGG
CGAGGCGCGAAAAACCGCGGTGGAGGAAGCGCTTAGCCGCGCCGGGCTGGCGGGCTTCGCCCCGCGCGATCCGGCCACGC
TCTCCGGCGGGCAGCGGGCGCGGGTGAGCCTGCTGCGCGCCCTGCTGGCGCGCCCCGAGGCGCTGCTGCTCGATGAACCC
TTCAGCCGCCTGGATGCCAGCCTGCGCGCCGGGTTCCGCCGCTGGGTCTTTGAATAA

Upstream 100 bases:

>100_bases
CCGCTCAGGCGCTGTGGCAATTATTGCTGCCGGCGGTATGCTTTACCCTAACGGCTCTGCTGGCCTGGCTGGCAGGCCGC
TATCGACGAGGACTTCGCTA

Downstream 100 bases:

>100_bases
CTGGCCCGCCAGGCCATTCCGGCGATCCTGGTGACCCACGATCGCGAGGACTGCCCGCCGACGGGGCGCTGCCTGGCGAT
GGAGCGCTGGCAATGAAGGA

Product: putative ABC transport system ATP-binding component

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 178; Mature: 178

Protein sequence:

>178_residues
MLTVNHLTLSVRRQPLLREVAFSVAPGEVLTLMGPSGSGKSTLFAWMIGALSGDFRARGELWLNKRRCDTLPTEHRRIGI
LFQDPLLFDHFSVGQNLQLALPENVRGEARKTAVEEALSRAGLAGFAPRDPATLSGGQRARVSLLRALLARPEALLLDEP
FSRLDASLRAGFRRWVFE

Sequences:

>Translated_178_residues
MLTVNHLTLSVRRQPLLREVAFSVAPGEVLTLMGPSGSGKSTLFAWMIGALSGDFRARGELWLNKRRCDTLPTEHRRIGI
LFQDPLLFDHFSVGQNLQLALPENVRGEARKTAVEEALSRAGLAGFAPRDPATLSGGQRARVSLLRALLARPEALLLDEP
FSRLDASLRAGFRRWVFE
>Mature_178_residues
MLTVNHLTLSVRRQPLLREVAFSVAPGEVLTLMGPSGSGKSTLFAWMIGALSGDFRARGELWLNKRRCDTLPTEHRRIGI
LFQDPLLFDHFSVGQNLQLALPENVRGEARKTAVEEALSRAGLAGFAPRDPATLSGGQRARVSLLRALLARPEALLLDEP
FSRLDASLRAGFRRWVFE

Specific function: Probably part of a binding-protein-dependent transport system YnjCD. Probably responsible for energy coupling to the transport system [H]

COG id: COG4136

COG function: function code R; ABC-type uncharacterized transport system, ATPase component

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transporter domain [H]

Homologues:

Organism=Homo sapiens, GI9955966, Length=173, Percent_Identity=33.5260115606936, Blast_Score=74, Evalue=6e-14,
Organism=Homo sapiens, GI45243524, Length=173, Percent_Identity=33.5260115606936, Blast_Score=74, Evalue=6e-14,
Organism=Homo sapiens, GI9955968, Length=173, Percent_Identity=33.5260115606936, Blast_Score=74, Evalue=7e-14,
Organism=Homo sapiens, GI171184400, Length=182, Percent_Identity=32.4175824175824, Blast_Score=71, Evalue=6e-13,
Organism=Homo sapiens, GI46592915, Length=161, Percent_Identity=30.4347826086957, Blast_Score=70, Evalue=7e-13,
Organism=Homo sapiens, GI46592978, Length=161, Percent_Identity=30.4347826086957, Blast_Score=70, Evalue=8e-13,
Organism=Homo sapiens, GI46592898, Length=161, Percent_Identity=30.4347826086957, Blast_Score=70, Evalue=9e-13,
Organism=Homo sapiens, GI46592964, Length=161, Percent_Identity=30.4347826086957, Blast_Score=70, Evalue=9e-13,
Organism=Homo sapiens, GI46592956, Length=161, Percent_Identity=30.4347826086957, Blast_Score=70, Evalue=9e-13,
Organism=Homo sapiens, GI46592971, Length=161, Percent_Identity=30.4347826086957, Blast_Score=70, Evalue=9e-13,
Organism=Homo sapiens, GI215820660, Length=172, Percent_Identity=30.2325581395349, Blast_Score=67, Evalue=6e-12,
Organism=Homo sapiens, GI20143975, Length=172, Percent_Identity=30.2325581395349, Blast_Score=67, Evalue=6e-12,
Organism=Homo sapiens, GI157502203, Length=169, Percent_Identity=30.7692307692308, Blast_Score=66, Evalue=2e-11,
Organism=Homo sapiens, GI157502201, Length=169, Percent_Identity=30.7692307692308, Blast_Score=66, Evalue=2e-11,
Organism=Homo sapiens, GI9961250, Length=174, Percent_Identity=32.7586206896552, Blast_Score=65, Evalue=2e-11,
Organism=Homo sapiens, GI9955963, Length=165, Percent_Identity=32.1212121212121, Blast_Score=64, Evalue=6e-11,
Organism=Homo sapiens, GI9665248, Length=183, Percent_Identity=32.2404371584699, Blast_Score=64, Evalue=7e-11,
Organism=Escherichia coli, GI1788053, Length=177, Percent_Identity=64.9717514124294, Blast_Score=233, Evalue=7e-63,
Organism=Escherichia coli, GI1788761, Length=180, Percent_Identity=35.5555555555556, Blast_Score=107, Evalue=4e-25,
Organism=Escherichia coli, GI1790467, Length=157, Percent_Identity=35.6687898089172, Blast_Score=101, Evalue=2e-23,
Organism=Escherichia coli, GI87082267, Length=164, Percent_Identity=35.9756097560976, Blast_Score=101, Evalue=3e-23,
Organism=Escherichia coli, GI87081791, Length=170, Percent_Identity=37.0588235294118, Blast_Score=100, Evalue=5e-23,
Organism=Escherichia coli, GI87081709, Length=166, Percent_Identity=34.9397590361446, Blast_Score=98, Evalue=3e-22,
Organism=Escherichia coli, GI1786253, Length=150, Percent_Identity=40, Blast_Score=97, Evalue=4e-22,
Organism=Escherichia coli, GI1787712, Length=153, Percent_Identity=37.9084967320261, Blast_Score=95, Evalue=2e-21,
Organism=Escherichia coli, GI1787370, Length=157, Percent_Identity=36.9426751592357, Blast_Score=95, Evalue=2e-21,
Organism=Escherichia coli, GI1787029, Length=162, Percent_Identity=40.7407407407407, Blast_Score=92, Evalue=2e-20,
Organism=Escherichia coli, GI1788225, Length=178, Percent_Identity=35.3932584269663, Blast_Score=91, Evalue=4e-20,
Organism=Escherichia coli, GI1786563, Length=173, Percent_Identity=36.9942196531792, Blast_Score=88, Evalue=4e-19,
Organism=Escherichia coli, GI1786872, Length=141, Percent_Identity=40.4255319148936, Blast_Score=84, Evalue=5e-18,
Organism=Escherichia coli, GI1789672, Length=161, Percent_Identity=37.2670807453416, Blast_Score=83, Evalue=1e-17,
Organism=Escherichia coli, GI1789873, Length=168, Percent_Identity=33.9285714285714, Blast_Score=82, Evalue=3e-17,
Organism=Escherichia coli, GI1790544, Length=185, Percent_Identity=32.4324324324324, Blast_Score=81, Evalue=3e-17,
Organism=Escherichia coli, GI1788506, Length=197, Percent_Identity=32.994923857868, Blast_Score=81, Evalue=4e-17,
Organism=Escherichia coli, GI1787089, Length=170, Percent_Identity=34.7058823529412, Blast_Score=79, Evalue=1e-16,
Organism=Escherichia coli, GI1789593, Length=169, Percent_Identity=31.3609467455621, Blast_Score=78, Evalue=3e-16,
Organism=Escherichia coli, GI1789032, Length=157, Percent_Identity=32.484076433121, Blast_Score=78, Evalue=4e-16,
Organism=Escherichia coli, GI1786653, Length=187, Percent_Identity=30.4812834224599, Blast_Score=76, Evalue=1e-15,
Organism=Escherichia coli, GI1787105, Length=157, Percent_Identity=34.3949044585987, Blast_Score=76, Evalue=1e-15,
Organism=Escherichia coli, GI1786703, Length=178, Percent_Identity=33.7078651685393, Blast_Score=75, Evalue=3e-15,
Organism=Escherichia coli, GI87081834, Length=161, Percent_Identity=32.9192546583851, Blast_Score=75, Evalue=3e-15,
Organism=Escherichia coli, GI1788450, Length=185, Percent_Identity=34.5945945945946, Blast_Score=75, Evalue=3e-15,
Organism=Escherichia coli, GI48994883, Length=177, Percent_Identity=35.0282485875706, Blast_Score=71, Evalue=3e-14,
Organism=Escherichia coli, GI145693107, Length=165, Percent_Identity=35.1515151515151, Blast_Score=70, Evalue=8e-14,
Organism=Escherichia coli, GI1787500, Length=162, Percent_Identity=33.3333333333333, Blast_Score=69, Evalue=2e-13,
Organism=Escherichia coli, GI1789962, Length=163, Percent_Identity=33.1288343558282, Blast_Score=69, Evalue=2e-13,
Organism=Escherichia coli, GI1786398, Length=155, Percent_Identity=34.1935483870968, Blast_Score=69, Evalue=2e-13,
Organism=Escherichia coli, GI1790162, Length=183, Percent_Identity=30.6010928961749, Blast_Score=67, Evalue=7e-13,
Organism=Escherichia coli, GI1789963, Length=173, Percent_Identity=29.4797687861272, Blast_Score=66, Evalue=1e-12,
Organism=Escherichia coli, GI1789864, Length=185, Percent_Identity=28.1081081081081, Blast_Score=66, Evalue=1e-12,
Organism=Escherichia coli, GI48994943, Length=156, Percent_Identity=34.6153846153846, Blast_Score=66, Evalue=2e-12,
Organism=Escherichia coli, GI1788165, Length=170, Percent_Identity=30.5882352941176, Blast_Score=66, Evalue=2e-12,
Organism=Escherichia coli, GI48994997, Length=182, Percent_Identity=31.3186813186813, Blast_Score=65, Evalue=2e-12,
Organism=Escherichia coli, GI87081782, Length=166, Percent_Identity=30.7228915662651, Blast_Score=64, Evalue=4e-12,
Organism=Escherichia coli, GI1787547, Length=176, Percent_Identity=29.5454545454545, Blast_Score=64, Evalue=4e-12,
Organism=Escherichia coli, GI1787758, Length=175, Percent_Identity=30.2857142857143, Blast_Score=62, Evalue=2e-11,
Organism=Escherichia coli, GI1787164, Length=171, Percent_Identity=35.0877192982456, Blast_Score=62, Evalue=2e-11,
Organism=Escherichia coli, GI1789891, Length=179, Percent_Identity=32.4022346368715, Blast_Score=61, Evalue=5e-11,
Organism=Escherichia coli, GI48995001, Length=158, Percent_Identity=31.0126582278481, Blast_Score=61, Evalue=5e-11,
Organism=Escherichia coli, GI1789586, Length=157, Percent_Identity=31.2101910828025, Blast_Score=60, Evalue=8e-11,
Organism=Caenorhabditis elegans, GI17541710, Length=164, Percent_Identity=37.1951219512195, Blast_Score=83, Evalue=8e-17,
Organism=Caenorhabditis elegans, GI71984940, Length=165, Percent_Identity=36.3636363636364, Blast_Score=80, Evalue=5e-16,
Organism=Caenorhabditis elegans, GI212646699, Length=164, Percent_Identity=31.7073170731707, Blast_Score=77, Evalue=4e-15,
Organism=Caenorhabditis elegans, GI25146777, Length=164, Percent_Identity=34.1463414634146, Blast_Score=75, Evalue=1e-14,
Organism=Caenorhabditis elegans, GI115533592, Length=164, Percent_Identity=35.9756097560976, Blast_Score=74, Evalue=5e-14,
Organism=Caenorhabditis elegans, GI193211017, Length=165, Percent_Identity=33.9393939393939, Blast_Score=74, Evalue=5e-14,
Organism=Caenorhabditis elegans, GI193211015, Length=165, Percent_Identity=33.9393939393939, Blast_Score=74, Evalue=5e-14,
Organism=Caenorhabditis elegans, GI71996809, Length=165, Percent_Identity=33.9393939393939, Blast_Score=74, Evalue=5e-14,
Organism=Caenorhabditis elegans, GI17558664, Length=164, Percent_Identity=32.9268292682927, Blast_Score=73, Evalue=7e-14,
Organism=Caenorhabditis elegans, GI17567265, Length=168, Percent_Identity=32.7380952380952, Blast_Score=70, Evalue=7e-13,
Organism=Caenorhabditis elegans, GI193208177, Length=168, Percent_Identity=31.547619047619, Blast_Score=69, Evalue=1e-12,
Organism=Caenorhabditis elegans, GI71992285, Length=173, Percent_Identity=28.3236994219653, Blast_Score=68, Evalue=2e-12,
Organism=Caenorhabditis elegans, GI193209708, Length=174, Percent_Identity=29.3103448275862, Blast_Score=67, Evalue=5e-12,
Organism=Caenorhabditis elegans, GI115534520, Length=167, Percent_Identity=29.3413173652695, Blast_Score=65, Evalue=3e-11,
Organism=Saccharomyces cerevisiae, GI6323217, Length=168, Percent_Identity=30.952380952381, Blast_Score=64, Evalue=1e-11,
Organism=Saccharomyces cerevisiae, GI6319856, Length=168, Percent_Identity=30.3571428571429, Blast_Score=64, Evalue=1e-11,
Organism=Saccharomyces cerevisiae, GI6324985, Length=165, Percent_Identity=28.4848484848485, Blast_Score=62, Evalue=4e-11,
Organism=Drosophila melanogaster, GI17647959, Length=165, Percent_Identity=32.1212121212121, Blast_Score=76, Evalue=1e-14,
Organism=Drosophila melanogaster, GI28574533, Length=150, Percent_Identity=36.6666666666667, Blast_Score=74, Evalue=4e-14,
Organism=Drosophila melanogaster, GI161076682, Length=168, Percent_Identity=31.547619047619, Blast_Score=70, Evalue=6e-13,
Organism=Drosophila melanogaster, GI161076684, Length=168, Percent_Identity=31.547619047619, Blast_Score=70, Evalue=6e-13,
Organism=Drosophila melanogaster, GI24581617, Length=168, Percent_Identity=31.547619047619, Blast_Score=70, Evalue=6e-13,
Organism=Drosophila melanogaster, GI24581615, Length=168, Percent_Identity=31.547619047619, Blast_Score=70, Evalue=6e-13,
Organism=Drosophila melanogaster, GI85726357, Length=163, Percent_Identity=30.6748466257669, Blast_Score=70, Evalue=8e-13,
Organism=Drosophila melanogaster, GI281363262, Length=163, Percent_Identity=31.9018404907975, Blast_Score=70, Evalue=1e-12,
Organism=Drosophila melanogaster, GI24653245, Length=163, Percent_Identity=31.9018404907975, Blast_Score=69, Evalue=1e-12,
Organism=Drosophila melanogaster, GI24581191, Length=160, Percent_Identity=26.25, Blast_Score=69, Evalue=2e-12,
Organism=Drosophila melanogaster, GI24581189, Length=160, Percent_Identity=26.25, Blast_Score=69, Evalue=2e-12,
Organism=Drosophila melanogaster, GI24581193, Length=160, Percent_Identity=26.25, Blast_Score=69, Evalue=2e-12,
Organism=Drosophila melanogaster, GI24581195, Length=160, Percent_Identity=26.25, Blast_Score=69, Evalue=2e-12,
Organism=Drosophila melanogaster, GI24666092, Length=181, Percent_Identity=28.1767955801105, Blast_Score=65, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003439
- InterPro:   IPR017871
- InterPro:   IPR003593 [H]

Pfam domain/function: PF00005 ABC_tran [H]

EC number: NA

Molecular weight: Translated: 19701; Mature: 19701

Theoretical pI: Translated: 11.41; Mature: 11.41

Prosite motif: PS00211 ABC_TRANSPORTER_1 ; PS50893 ABC_TRANSPORTER_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLTVNHLTLSVRRQPLLREVAFSVAPGEVLTLMGPSGSGKSTLFAWMIGALSGDFRARGE
CEEECEEEEEHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCCCCH
LWLNKRRCDTLPTEHRRIGILFQDPLLFDHFSVGQNLQLALPENVRGEARKTAVEEALSR
HEECCCCCCCCCCCCCEEEEEEECCEEEHHHCCCCCEEEECCCCCCCHHHHHHHHHHHHH
AGLAGFAPRDPATLSGGQRARVSLLRALLARPEALLLDEPFSRLDASLRAGFRRWVFE
CCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MLTVNHLTLSVRRQPLLREVAFSVAPGEVLTLMGPSGSGKSTLFAWMIGALSGDFRARGE
CEEECEEEEEHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCCCCH
LWLNKRRCDTLPTEHRRIGILFQDPLLFDHFSVGQNLQLALPENVRGEARKTAVEEALSR
HEECCCCCCCCCCCCCEEEEEEECCEEEHHHCCCCCEEEECCCCCCCHHHHHHHHHHHHH
AGLAGFAPRDPATLSGGQRARVSLLRALLARPEALLLDEPFSRLDASLRAGFRRWVFE
CCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503 [H]